Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6337g00004 ATGGATTTCTATGAGGTGATAGTGTGGTGCTCTCTCTTACTTTCTTCCTTCATACCCAACATCACTGCACTGAGCAGTATCACTCCAAATAAGCCCTTGCATAGTAATGAAACCCTGGTTTCAGCATCTGGAACCTTTGAAGCAGGATTCTTTAGCATTGGAAGTTCTCAGAGATATTACTTTTGCATATGTTACAAGAATATATCACCTAGAACATTTGTATGGGTGGCCAACAGAAACACCCCATTGGATAACTCCACTGGGGTTTTGAAAGTCAGTGATTGGGGGAATCTTGCTGTACTTGATGGCACTGGTGCAAATGTTTGGTCATCCAATGCATCAACCACTGTTCAGAAGCCAACTGTGGAGCTCTTGGACTCTGGCAACCTTGTTGTGAAAGATGGTGGTAGTAATGCCCCAGAAAAGATTTTGTGGCAAAGCTTTGATTATCCTGGTGACACTTTACTTCCTGGAATGAAACTCAGAAGCAGTTTTGTGACAGGTGCACTTAGTTCTCTGACATCATGGAGGAACACGGAAGATCCTGCTGTGGGGGAATTTTCATTGTATATTGATCCTCATGGTTTTCCTCAGAGAGTGACTACAAAGGGAGGGACTTGGTTGTACAGAGCAGGTTCGTGGAATGGTTATCAATTCTCAGGAGTTCCTTGGAAACTGTTGCCCAATTTCTTCAATTACTATTTTGTGTTAACCAAGGAGGAAGTGTATTATGAGTATGAACTCTTGGAACGTTCTGTTGTTACAAGGTTTGTGATCAACCAAGCAGGTAGCGATCAACGTTTCACATGGTCAGAGAGAACAAAGAGTTGGGAGCTTTTTGCCTCTGGCCCCAGGGAACAGTGTGAAAACTATGGCTTGTGTGGTGTAAATTCTGTTTGCAATGTAAATAGCTACCCCATATGTGAATGCTTGGATGGTTTTATCCCTAAGTTCACAGAAAAGTGGAGATCATTGGATTGGTCTGGTGGGTGTGTTCGGAGAATGAGTCTGAGTTGTGACAATGAAGATTGTTTTGTTAAGTACGAGGGAATGAGATTGCCAGACACATCTTCCTCCTGGTATGACGCAAGAATGAGTCTTGATGAATGTGAGAGGGTGTGCTTGCAAAACTGCTCTTGCACAGCATACACAAACTTAGATGTCAGAGGTGGTGGGAGTGGCTGCCTTCTTTGGTTTGGTAACATTGTGGATATGGGAAAACATCTCTCCCAAGGACAAGAGATTTACATACGAATGGCTGCTTCAGATATAGAGAACACTTGGCATAAAAGGCACATTAACAAGAAGCTTGTGGTGGTTTTGGCAGTACTCGTTGCGTTCATTATAGTCATAACATTAGGATCAGTTCTATACATACGGAGAAAACTTGAGAAACAAGGAAAGACAAATACAGTGGACCAGATGCCTCACACTATAAAACATGGGAAGAAAGACATTGACTTACCAACCCTTGATTTATCAACCATTGATAATGCCACTCGTAATTTCTCTGTCAATAACATATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTGTTCTGGCAAATGGACAAGAAATAGCTGTTAAGAGACTTTCCAAAAATTCTGGACAAGGATTAGATGAATTCAGAAATGAAGTGGTGTTGATTGCCAATCTTCAGCACCGGAATCTTGTAAAGATTCTAGGATGTTGTGTTCAAGAGGAGGAGAGAATCTTAATCTATGAATTCATGCCTAACAGGAGCTTGGATCTTTACATTTTTGATAACACAAGAAAGAAATTATTGGATTGGAGCAAACGCTTCCAAATTATAAGTGGCATAGCTAAAGGTCTTCTATATCTTCATCATGATTCTAGACTAAGGATCATTCACAGAGATATCAAAGCAAGCAATATTCTTCTTGATAATAATATGAATCCAAAGATATCAGACTTTGGACTAGCAAGAATGCTTGTTGGTGATCACACTAAAGCCAATACAAAAAGGGTTGTAGGAACTCATGGTTACATGCCTCCTGAATATGCAGTGTATGGATATTTTTCAGTGAAATCAGATGTCTTCAGCTTTGGTGTTATTGTGCTAGAGATTGTTAGTGGGAGGAAGAACACAAAATTTCTTGATCCACTGAACCAACTTAACCTTATAGGGCATGCTTGGAGATTGTGGAGTGAAGGGAGGCCTTTGGAGCTGGTTGATGAATCACTAGGTGATTCAGTCATTGAAAGTGAAGTGTTGAAAATTGTTCATGTGGGGCTCTTGTGCGTGCAAGAAAGACCAGAGGATAGGCCCAACATGTCAAGTGTGGTTCTGATGCTGAATGGTGAGAGCCCATTGCCCAAGCCCAAGCAGCCTGCATTTTATCCACACCATGAAGATTTTTCTTCATCCACCAAGTGTGAATTCAGCTCAAATGATATGTCCATCAGTTTAGAGATGGAAAGCTTAAAGGCAATGGTTTTGTGGTCTCTTGTGTTGCATTTCATACCAGGTTTGAGCACCCTTGAAACCATTGGTCCTGGCCAATCAGTGAAGGATAATGAGACTCTAGTTTCAGCAGAAGGGACTTTTGAAGCAGGGTTCTTCAACTTTGGGGATCAAAGTAGTCAATACTTTGGTATATGGTACAAGGATATTTCTCCAAGAACAGTTGTGTGGATAGCCAATAGAGATACTCCAGTTCAAAACTCCTCAGGAGTTTTGAATGTAACTCATGTGGGAAATCTTTTCATTTTGAATGGTTCAGGGGCCACATTCTGGTCTTCCAATACATCAACAGCTGCAAAGAATCCTGTTGTGCAGCTTTTGGAGACTGGAAATCTTGTTGTGAGAGAAGAAAGCAACCCAGAGAATCTTCTATGGCAGAGTTTTGATCTTCCTGGGGACACTTTGTTGCCAGGGATGCGACTTCGAAGTAGCATGGGAAATGGCAGTTTTACATCTCTGACATCTTGGAGAGACACAGAAGATCCTGGTAGAGGTGTGTATTCATATCACATAGATACTCGTGGTTTTCCTCAAGTGGTGATTACGAAGGGAGGGGCATTGTTGTATAGGCCAGGTTCATGGAATGGCAATATTTTATCTGGAATTCCTTCTGCAACATTGTACAAAATCTTTAATTTCTCTTTTGTTATAACTGAGAAGGAAGTCTCTTATGGATATGAACTACTGAACAAGTCAATTGTTTCGAGGTACATGATCACGTTAACAGGTCAAATACAACGTTTTGTTTTGTCTGATTTGACAAATAGTTGGCAGCTTTTCTACTCAGGCCCCGCAGACCAGTGTGATAATTATGCCGTTTGTGGGGTGAATTCTAATTGTGATGTAAATAGCTCTCCAACGTGTGAGTGCCTTCAGGGTTTCATTCCCAGATCCGAAGAAAAATGGAATGCACAAAACTGGTCAGATGGGTGTGTTAGGAGAGTTAATTTAGATTGTGGCAACAGTGATGGCTTTCAGAAGTATCAGGGAACGAAGTTGCCGGACACATCAACCTCATGGTTTGACAGAAGCATGAACCTTGAGGAATGTAAGAATTTCTGTCTGGAAAACTGCTCCTGCACAGCATATGCAAATTTAGATATCAGAAATGGTGGAAGTGGATGCTTGCTTTGGTTTAATAACATTGTGGACGTGAGAAAACTAACCACCGGAGGACAAGATCTTTTCATAAGATTGGCAGCTTCAGATCTAGGTCATGAAAAAGGCTTACGCAAGAAGCAGCTTGCAGGAATTCTTGCAGGTTCTGCAGTGTTTATTGTGGTCATGATATTATTGGCAGTGGCCATACTTCGGAGAAAAAGGCTTGAGAAGCCAGGAAACAACAAAAGTGTTAGCTGGAAAAATCACTCTGTTAAGACACAGAAGGAAGACATTGACATTCCAATATTTAAGTTTTCAACCATAGCTAATGCAACTAATGACTTTTGCGTTACTAACATATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTACTTTGGCAAATGGCCAAGATATAGCTGTGAAGCGGCTTTGCAATAATTCAGGACAAGGACCGAAAGAGTTCATAAACGAAGTTGTGCTAATTGCTAATCTTCAGCACCGGAACCTTGTGAAGCTTCTTGGGTGTTGCATTCAAGATGATGAGAGGATCTTGATATATGAATTCATGACTAACAAAAGCTTGAACTACTTTATTTTTGATGAAGCTAGAAAATGTTTGCTAGATTGGGCTCAGCGCTTCCAAATTATTCGTGGGATTGCCAGAGGGCTTCTCTATCTTCATGAAGATTCTAGATTAAGAATTATCCATAGAGATCTCAAGACCAGCAATATTCTTCTAGATGAAAACATGAATCCAAAAATATCAGACTTTGGTCTCGCTACATCATTTGGAGGAGATGAAGTTGAAGGCCAAACAAAGAGAATAGTGGGAACTTATGGTTATATTTCTCCAGAATATGCAGCCCGTGGGAATTTCTCAGTGAAATCTGATGTCTACAGTTTTGGTGTTATATTACTGGAGATAGTTTGTGGAAAAAAGAATAGGGAATATTCTGACGATCATGATCATGACCTTCTTGGACATGCATGGAGACTTTGGTGTGAAGAAAAACCAATGGAGTTGATAGATGAATCACTAGGCGAATCAGTAGCTCTAGCTGAAGCTGATGTATTGAGATGTATTCACATTGGGCTTCTATGTGTACAAGACAGAGCAGAGGATAGACCAGAAATGTCATTAATAGTTCTTATGCTGAATGGTGAGAAACCATTGCCCAGGCCAAGGGAACCTGCTTTTTATCCCCATCAATCTGGCTCTTCATCAGGAAATAGTAAACTGCAATCAAACAATGAGATTTCTATTTCATTGTTGGAGGCAAGATAG 4881 0.4079 MDFYEVIVWCSLLLSSFIPNITALSSITPNKPLHSNETLVSASGTFEAGFFSIGSSQRYYFCICYKNISPRTFVWVANRNTPLDNSTGVLKVSDWGNLAVLDGTGANVWSSNASTTVQKPTVELLDSGNLVVKDGGSNAPEKILWQSFDYPGDTLLPGMKLRSSFVTGALSSLTSWRNTEDPAVGEFSLYIDPHGFPQRVTTKGGTWLYRAGSWNGYQFSGVPWKLLPNFFNYYFVLTKEEVYYEYELLERSVVTRFVINQAGSDQRFTWSERTKSWELFASGPREQCENYGLCGVNSVCNVNSYPICECLDGFIPKFTEKWRSLDWSGGCVRRMSLSCDNEDCFVKYEGMRLPDTSSSWYDARMSLDECERVCLQNCSCTAYTNLDVRGGGSGCLLWFGNIVDMGKHLSQGQEIYIRMAASDIENTWHKRHINKKLVVVLAVLVAFIIVITLGSVLYIRRKLEKQGKTNTVDQMPHTIKHGKKDIDLPTLDLSTIDNATRNFSVNNILGEGGFGPVYKGVLANGQEIAVKRLSKNSGQGLDEFRNEVVLIANLQHRNLVKILGCCVQEEERILIYEFMPNRSLDLYIFDNTRKKLLDWSKRFQIISGIAKGLLYLHHDSRLRIIHRDIKASNILLDNNMNPKISDFGLARMLVGDHTKANTKRVVGTHGYMPPEYAVYGYFSVKSDVFSFGVIVLEIVSGRKNTKFLDPLNQLNLIGHAWRLWSEGRPLELVDESLGDSVIESEVLKIVHVGLLCVQERPEDRPNMSSVVLMLNGESPLPKPKQPAFYPHHEDFSSSTKCEFSSNDMSISLEMESLKAMVLWSLVLHFIPGLSTLETIGPGQSVKDNETLVSAEGTFEAGFFNFGDQSSQYFGIWYKDISPRTVVWIANRDTPVQNSSGVLNVTHVGNLFILNGSGATFWSSNTSTAAKNPVVQLLETGNLVVREESNPENLLWQSFDLPGDTLLPGMRLRSSMGNGSFTSLTSWRDTEDPGRGVYSYHIDTRGFPQVVITKGGALLYRPGSWNGNILSGIPSATLYKIFNFSFVITEKEVSYGYELLNKSIVSRYMITLTGQIQRFVLSDLTNSWQLFYSGPADQCDNYAVCGVNSNCDVNSSPTCECLQGFIPRSEEKWNAQNWSDGCVRRVNLDCGNSDGFQKYQGTKLPDTSTSWFDRSMNLEECKNFCLENCSCTAYANLDIRNGGSGCLLWFNNIVDVRKLTTGGQDLFIRLAASDLGHEKGLRKKQLAGILAGSAVFIVVMILLAVAILRRKRLEKPGNNKSVSWKNHSVKTQKEDIDIPIFKFSTIANATNDFCVTNILGEGGFGPVYKGTLANGQDIAVKRLCNNSGQGPKEFINEVVLIANLQHRNLVKLLGCCIQDDERILIYEFMTNKSLNYFIFDEARKCLLDWAQRFQIIRGIARGLLYLHEDSRLRIIHRDLKTSNILLDENMNPKISDFGLATSFGGDEVEGQTKRIVGTYGYISPEYAARGNFSVKSDVYSFGVILLEIVCGKKNREYSDDHDHDLLGHAWRLWCEEKPMELIDESLGESVALAEADVLRCIHIGLLCVQDRAEDRPEMSLIVLMLNGEKPLPRPREPAFYPHQSGSSSGNSKLQSNNEISISLLEAR 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6337g00004 1626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Vium6337g00004 1626 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 419 - -
Vium6337g00004 1626 CDD PAN_AP_plant 337 420 - -
Vium6337g00004 1626 Gene3D - 834 958 IPR036426 -
Vium6337g00004 1626 Gene3D - 21 148 IPR036426 -
Vium6337g00004 1626 CDD STKc_IRAK 509 776 - -
Vium6337g00004 1626 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Vium6337g00004 1626 CDD B_lectin 30 151 IPR001480 -
Vium6337g00004 1626 Gene3D Transferase(Phosphotransferase) domain 1 1388 1590 - -
Vium6337g00004 1626 Gene3D Transferase(Phosphotransferase) domain 1 579 780 - -
Vium6337g00004 1626 ProSiteProfiles PAN/Apple domain profile. 1149 1230 IPR003609 -
Vium6337g00004 1626 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 761 - -
Vium6337g00004 1626 CDD PAN_AP_plant 1145 1230 - -
Vium6337g00004 1626 SUPERFAMILY Protein kinase-like (PK-like) 490 795 IPR011009 -
Vium6337g00004 1626 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Vium6337g00004 1626 Pfam S-locus glycoprotein domain 1019 1127 IPR000858 GO:0048544
Vium6337g00004 1626 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Vium6337g00004 1626 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 148 - -
Vium6337g00004 1626 SUPERFAMILY Hairpin loop containing domain-like 341 409 - -
Vium6337g00004 1626 SUPERFAMILY alpha-D-mannose-specific plant lectins 871 1025 IPR036426 -
Vium6337g00004 1626 ProSiteProfiles Protein kinase domain profile. 1312 1598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6337g00004 1626 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 578 - -
Vium6337g00004 1626 Gene3D Phosphorylase Kinase; domain 1 477 578 - -
Vium6337g00004 1626 Gene3D Phosphorylase Kinase; domain 1 1285 1387 - -
Vium6337g00004 1626 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1148 1229 - -
Vium6337g00004 1626 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 833 958 - -
Vium6337g00004 1626 Pfam Protein tyrosine and serine/threonine kinase 505 772 IPR001245 GO:0004672|GO:0006468
Vium6337g00004 1626 Pfam D-mannose binding lectin 72 177 IPR001480 -
Vium6337g00004 1626 Pfam D-mannose binding lectin 884 987 IPR001480 -
Vium6337g00004 1626 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Vium6337g00004 1626 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 782 - -
Vium6337g00004 1626 CDD B_lectin 843 961 IPR001480 -
Vium6337g00004 1626 SUPERFAMILY Protein kinase-like (PK-like) 1297 1607 IPR011009 -
Vium6337g00004 1626 MobiDBLite consensus disorder prediction 1593 1613 - -
Vium6337g00004 1626 Pfam Protein kinase domain 1315 1515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6337g00004 1626 SMART ntp_6 1150 1229 IPR003609 -
Vium6337g00004 1626 SMART ntp_6 340 419 IPR003609 -
Vium6337g00004 1626 SMART blect_4 842 961 IPR001480 -
Vium6337g00004 1626 SMART blect_4 30 151 IPR001480 -
Vium6337g00004 1626 Gene3D Hepatocyte Growth Factor 336 418 - -
Vium6337g00004 1626 Gene3D Hepatocyte Growth Factor 1146 1228 - -
Vium6337g00004 1626 Pfam PAN-like domain 1149 1215 IPR003609 -
Vium6337g00004 1626 Pfam PAN-like domain 339 405 IPR003609 -
Vium6337g00004 1626 ProSiteProfiles Bulb-type lectin domain profile. 836 957 IPR001480 -
Vium6337g00004 1626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1433 1445 IPR008271 GO:0004672|GO:0006468
Vium6337g00004 1626 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1388 1591 - -
Vium6337g00004 1626 CDD STKc_IRAK 1318 1586 - -
Vium6337g00004 1626 ProSiteProfiles Protein kinase domain profile. 503 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6337g00004 1626 SMART serkin_6 1312 1560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6337g00004 1626 SMART serkin_6 503 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6337g00004 1626 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1277 1387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6337g00004 Vium-Chr6337 23626 34687 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6337g00004 431 791 Receptor kinase-like Gene Family AT4G23190 51.226 2.40e-119 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium6337g00004 PK_Tyr_Ser-Thr 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6337g00004 - - vum:124842963 3301.53