Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6337g00002 ATGAAAAAAGTTGTTCTAATGTTTGTTCTTACTATGATTCTACTGTTCTTTTTCTGCACCTCCACTGCAAATGACTCTATATCCCAATTTAAATCACTTTCTGTAGGCAATACATTGGTTTCTGAAGAGGGTACTTTTGAATTGGGTTTCTTCCGTCCAGGACGTGCTGCAGATCTTTACTTGGGGATATGGTACAAGTCAATACCTGTGAAGACTGTTGTGTGGGTTGCCAACAGAGCCAAGCCAGTAAAAGGCAACTCAAGTGTGTTGCATATTAACAGTGAGGGAAATCTTGAGCTTGTCAACCATAATGGGGTTGTGGCTTGGTCAGCAAACTCCACAAAGAAGGTTCAGAATCCCATTGTCCAGCTGTTAAATTCTGGAAATTTGGTAGTGAGAGATGAAGGAGACCAAGATCCTGAAAGCTACTTGTGGCAAAGCTTTGATTACCCTTCTGATACACTTTTACCAGGAATGAAGCTGGGATGGGACTTAAGAACCGGCCTTGAGCGGCGTGTATCTGCTTGGAAGAATTGGGATGATCCATCACCAGGTGATTTCAGTTGGGGTATCTCTCTCGAAGGATTTCCTCAAGTGATGATGTGGAAGGGGTCAAAGGTGTTTTACCGTGGTGGTCATTGGAATGGTCTTGGATTCAGTGGTGCCCCAGAATTGAAGGCAAATCCAGTTTTTAAGTTCAAGTTTGTTTCCAACGAAAATGAGGTGTACTACACCTACAGCCTCACGAATGAGTCTATCATTTCAAGGATTGTTATGAACCAATCTATTTCCACTCGCCAAAGGTACATATGGATTGAAGATGCTCAAGCTTGGAGGATTTATGCATCTGTACCGAGAGATAACTGTGATTCCTACAATATCTGTGGACAAAATGGGAATTGCGTAATTGGTGATTCTCCAGTGTGCCAGTGTTTAAGTGGATTTAAACCAAGATTTCCGAGGCAGTGGGACATGATGGACTGGACTCAAGGATGTTTTCTCTCTGAAGAATGGAACTGTGAGCAAAGGAGGAAACATGGGTTTGTTAAAGTCAGTCAGCTGAAAGCTCCAGATACTTCAAATTCTTGGGTCAATGAGAGTATGAGTCTCACTGAGTGCAGGGATAAATGCTTGGAGAATTGTTCCTGTAAAGCTTATGCAAATACAGATGTTAGAGAAGGAGGTAAGGGCTGTTTGATGTGGTTTGGTGATCTCAGGGATATCAGAGAATTTTCTGCTGGTGGTTGGGATTTATATATTAGAACTAAAATTTTAGAATCAGGTGAGAAAAAAAACTATAGCATGAAGGTGGTGGCAGTAGTCCTCACAACAGTCGCAGTCGTTGCAGCCATTCTGCTTTTGTACCAATTTGGAAAGAGAATGAAAAAGTTCAGAGCTTGTGAATCAAGTAATTCCTTGATAGTAGATAATAATAAAGATGAGGAAGAGCTTGAGCTTCCTTTCTTTGATCAAGCTGCAATCACCAAAGCAACTAATGGCTTCTCAATTAACAATAAGCTTGGAGAAGGTGGATTTGGGACAGTATATATGGGTACCCTAGCAGATGGGCAGGAAATTGCTGTGAAAAGACTCTCACAAAGTTCTGGACAAGGGTTTAATGAATTTAAGAATGAGGTCATATTGATAGCCAAACTGCAGCATCGGAACCTAGTTAAGCTTGTTGGTTGTTGCATTGAAGGAGAGGAGAAGATGCTTATCTATGAATACATGCCCAACAAAAGCCTTGACTCCTTTATATTTGATCAGGCAAAGGCTAAAATTTTAGATTGGTCTAAACGCTTCAATATTATTTGTGGAGTTGCGCGAGGACTTCTGTATCTTCATCAAGATTCCAGATTGAGAATTATACACAGAGATCTCAAAGCAAGTAATGTTCTACTTGATCATGAGTTCAACCCAAAAATATCTGATTTTGGCATGGCTAGAACTTTTGGGGGAGATCAGATTGAAGGAAATACAAAAAGGGTGGTTGGAACATATGGTTACATGGCACCCGAATATGCCATTTATGGTCTATTCTCGGTGAAATCTGATGTCTTCAGCTTTGGTGTACTAATGCTAGAGATAGTAAGTGGAAAGAAGAACAGAGGTTTTTCACATTCAAATAATAGTATTAACCTTATTGGACAAGCATGGAGATTTTGGAAAGAAAGAAGACCTCTGGACTTACTTGATTCATGCATGGAGAATTCATCTGTTCTGTCAGGAGCATTGCGTTGTATCCATATCAGTCTTTTATGTGTTCAACAGTTTCCTGAGGATAGGCCAAGTATGTCCACTGTGGTAGTGATGCTGAGCAGTGAGAGTTCCCTACCTCAACCTAAGGAGCCTGGTTTCCTTATGGAGAAGGAGAAAATTTTTCTTGGAGCAGAGTCCTCTACCAAGCACCTGTTTTCTTCTACCAATGATATAAGTCTTACCATGTTAGAGCCTCGCTAG 2460 0.4081 MKKVVLMFVLTMILLFFFCTSTANDSISQFKSLSVGNTLVSEEGTFELGFFRPGRAADLYLGIWYKSIPVKTVVWVANRAKPVKGNSSVLHINSEGNLELVNHNGVVAWSANSTKKVQNPIVQLLNSGNLVVRDEGDQDPESYLWQSFDYPSDTLLPGMKLGWDLRTGLERRVSAWKNWDDPSPGDFSWGISLEGFPQVMMWKGSKVFYRGGHWNGLGFSGAPELKANPVFKFKFVSNENEVYYTYSLTNESIISRIVMNQSISTRQRYIWIEDAQAWRIYASVPRDNCDSYNICGQNGNCVIGDSPVCQCLSGFKPRFPRQWDMMDWTQGCFLSEEWNCEQRRKHGFVKVSQLKAPDTSNSWVNESMSLTECRDKCLENCSCKAYANTDVREGGKGCLMWFGDLRDIREFSAGGWDLYIRTKILESGEKKNYSMKVVAVVLTTVAVVAAILLLYQFGKRMKKFRACESSNSLIVDNNKDEEELELPFFDQAAITKATNGFSINNKLGEGGFGTVYMGTLADGQEIAVKRLSQSSGQGFNEFKNEVILIAKLQHRNLVKLVGCCIEGEEKMLIYEYMPNKSLDSFIFDQAKAKILDWSKRFNIICGVARGLLYLHQDSRLRIIHRDLKASNVLLDHEFNPKISDFGMARTFGGDQIEGNTKRVVGTYGYMAPEYAIYGLFSVKSDVFSFGVLMLEIVSGKKNRGFSHSNNSINLIGQAWRFWKERRPLDLLDSCMENSSVLSGALRCIHISLLCVQQFPEDRPSMSTVVVMLSSESSLPQPKEPGFLMEKEKIFLGAESSTKHLFSSTNDISLTMLEPR 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6337g00002 819 CDD B_lectin 32 151 IPR001480 -
Vium6337g00002 819 SUPERFAMILY Protein kinase-like (PK-like) 486 772 IPR011009 -
Vium6337g00002 819 ProSiteProfiles PAN/Apple domain profile. 340 423 IPR003609 -
Vium6337g00002 819 Gene3D Phosphorylase Kinase; domain 1 475 576 - -
Vium6337g00002 819 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Vium6337g00002 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 148 - -
Vium6337g00002 819 Pfam Protein tyrosine and serine/threonine kinase 502 770 IPR001245 GO:0004672|GO:0006468
Vium6337g00002 819 CDD STKc_IRAK 507 772 - -
Vium6337g00002 819 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524
Vium6337g00002 819 Gene3D - 19 148 IPR036426 -
Vium6337g00002 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 780 - -
Vium6337g00002 819 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Vium6337g00002 819 SMART ntp_6 343 422 IPR003609 -
Vium6337g00002 819 Pfam PAN-like domain 340 408 IPR003609 -
Vium6337g00002 819 Gene3D Transferase(Phosphotransferase) domain 1 577 783 - -
Vium6337g00002 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Vium6337g00002 819 Pfam D-mannose binding lectin 72 177 IPR001480 -
Vium6337g00002 819 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Vium6337g00002 819 SMART blect_4 30 151 IPR001480 -
Vium6337g00002 819 ProSiteProfiles Protein kinase domain profile. 501 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6337g00002 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 763 - -
Vium6337g00002 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Vium6337g00002 819 CDD PAN_AP_plant 339 422 - -
Vium6337g00002 819 SMART serkin_6 501 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6337g00002 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 465 576 - -
Vium6337g00002 819 PIRSF SRK 1 819 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6337g00002 Vium-Chr6337 1471 5533 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6337g00002 428 789 Receptor kinase-like Gene Family AT4G23230 56.284 4.74e-133 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium6337g00002 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6337g00002 - - cave:132173746 1071.61