Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6333g00002 ATGAGCAACGCTTCACGAAAGCGCGCGGCGTCGGCGGTGGCGCCACAACCTCCGCCGCCAAAGCAAGTCTTAATGACTCAGGAAGAGGACTTCATGGACGAAGACGTGTTCATCGACCAAACCCTTGTTTCAGAAGATGAAGAGTCCCTCATTCTCCGCGACATCGAGCAGCGCCAGGCCCTCGCCGCGCGGCTATCCAAGTGGACGCGTCCTCCTCTCTCCGATGATTACGTCGCACAATCTCGAGGCGTCGTTTTTCAGCAGTTGGAGATTGATTATGTGATCGGGGAGAGTCACAGGGAGTTGCTGCCGAACTTGTCTGGACCTGCTGCTATTATCAGAATTTTTGGTGTTACGAAAGAAGGACACAGTGTTTGCTGCAATGTTCACGGCTTTGAACCATATTTCTACATCTCTTGCCCTCCTGGAATGGGTCCAGATGATATCTCTCATTTTCACCAAGCACTTGAGGGAAGGATGAGAGAAGCCAATAGAAATAGTAATGTAGGAAAATTCGTTCGCCGCATTGAAATGGTGCAGAGGAGAAGTATTATGTACTATCAGCAATCTGATTCTCAGCCCTTTCTCAAAATAGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGGGGTATTCAGCTTGATGGTCTGGGAATGAAGAGCTTCTTGACTTATGAAAGCAATGTACTTTTTGCTCTACGGTTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAAATTCTGGCAGGAAAATATAAAAAGATAGTGAAAAGCTTGTCTTATTGCCAGTTGGAGTTTGATTGCCTGTATTCTGATTTGATTAGTCATGCTCCAGAAGGGGAGTATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCACTTTCCCGAGCCTAGCCATGATCCTGTTATCCAGATTGCTAATTTGGTTACTTTACAAGGAGAAGACCAGCCACTTATTCGCAATGTGATGACCCTTAAATCATGTTCTCCTATTGTTGGTGTTGATGTGATGTCATTTGATACGGAAAGAGAAGTCCTACTTGCTTGGAGGGTAATATACTTATCAAGCAAAAGAATTTCAGAACTCATCCCCTCATATGGTGAATCCATTATGGGTATTCTAAATGTGAGAAATCGACCATTCAAAATTCATACTCTGCTCGTCAATGTGCAGGATGCATATCTTCCTCAGCGGCTTTTGGATAAACTGATGTTCATTTACAACTATGTGGAGATGGCTCGAGTAACAGGTGTTCCAATTTCTTTTCTACTTTCCAGAGGCCAAAGCATTAAGGTACTTTCTCAACTTCTTAGGAAAGCAAGACAGAAGAATCTGGTCATTCCTAATGTCAAGCAGGTTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTGTTGGAGGCAAGAGCTGGATTTTATGAAAAACCAATCGCTACGTTAGATTTTGCATCCCTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTGACTTCTGAAGATGCTCGCAAGCTCAACATCCCTTCAGAGTCCTTGAACAGAACTCCATCTGGTGAAACATTTGTTAAATCAAATCTGCAGAAGGGAATACTGCCTGAAATACTTGAAGAGCTATTAACAGCCCGTAAAAGGGCAAAAGCAGATTTAAAGGAGGCAAAGGATCCCCTGGAGAGGGCAGTGCTAGATGGTAGGCAGCTGGCCCTGAAAATTAGTGCAAATTCCGTCTATGGGTTTACTGGGGCTACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATGGTCGACAAATGATTGAGCACACAAAAAAACTTGTGGAAGATAAATTCACGACACTTAATGGCTATGAACACAATGCTGAGGTAATATATGGAGACACGGATTCAGTCATGGTACAATTTGGTGTTTCTGCAGTAGAACAGGCCATGAACTTGGGGCGAGAAGCTGCCGAATATATAAGTGGAACTTTCACAAAACCCATCAAGCTAGAATTTGAGAAGGTTTATTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAAGTTCGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGTTTGTTGGTCAAAAACCTGGTGAATGATTGTCTTCACAAAATACTGATTGACAGGGACATTCCAGGGGCTGTCCAGTATGTCAAGAACGCAATTTCAGATCTACTCAGGAATCGTATGGATTTATCACTGTTGGTTATTACAAAGGGTTTAACAAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGAGACAGAGTACCTTATGTAATTATCAAAGGTGCAAAAGGTGCGAAGGCATATGAGAAATCAGAGGACCCTATTTATGTTCTAGAGAACAACATACCAATAGATGCTCAATACTATCTTGAGAATCAAATTAGCAAGCCGATCCTCAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAGAGAACTTCTCCATGGAAGTCATACAAGATCTATTTCTATTTCTACTCCGTCAAATAGTGGCTTATGGAAATTTACTAAGAAAGAGCTTACCTGCATTGGCTGTAAAGCTGTATTAGGGAAGGATCATCACACCGTCTGTTCACATTGCAAAGGAAGGGAAGCTGAGCTATATTGTAAAACGGTATCTCGAGTGTCTGAGCTGGAGATGCATTTTGGGAAGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAAGATATTCTCTGCACAAGTCGGGATTGTCCAATCTTTTATCGACGAAAGAAGGCACAGAAAGAAATGTCTGAAGCACAATCACAATTGGACCGGTGGAGCTTTTAA 2988 0.4254 MSNASRKRAASAVAPQPPPPKQVLMTQEEDFMDEDVFIDQTLVSEDEESLILRDIEQRQALAARLSKWTRPPLSDDYVAQSRGVVFQQLEIDYVIGESHRELLPNLSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMGPDDISHFHQALEGRMREANRNSNVGKFVRRIEMVQRRSIMYYQQSDSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIEILAGKYKKIVKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPSHDPVIQIANLVTLQGEDQPLIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRVIYLSSKRISELIPSYGESIMGILNVRNRPFKIHTLLVNVQDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVIPNVKQVGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTSEDARKLNIPSESLNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLERAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEQAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLRNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKGAKGAKAYEKSEDPIYVLENNIPIDAQYYLENQISKPILRIFEPILKNASRELLHGSHTRSISISTPSNSGLWKFTKKELTCIGCKAVLGKDHHTVCSHCKGREAELYCKTVSRVSELEMHFGKLWTQCQECQGSLHQDILCTSRDCPIFYRRKKAQKEMSEAQSQLDRWSF 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6333g00002 995 Coils Coil 976 995 - -
Vium6333g00002 995 SMART polmehr3 293 661 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vium6333g00002 995 Gene3D DNA Polymerase, chain B, domain 1 89 265 - -
Vium6333g00002 995 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 406 961 - -
Vium6333g00002 995 Pfam C4-type zinc-finger of DNA polymerase delta 905 976 IPR025687 -
Vium6333g00002 995 PRINTS DNA-directed DNA-polymerase family B signature 494 507 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vium6333g00002 995 PRINTS DNA-directed DNA-polymerase family B signature 586 598 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vium6333g00002 995 PRINTS DNA-directed DNA-polymerase family B signature 647 655 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vium6333g00002 995 SUPERFAMILY DNA/RNA polymerases 460 870 IPR043502 -
Vium6333g00002 995 Pfam DNA polymerase family B 435 868 IPR006134 GO:0000166|GO:0003677
Vium6333g00002 995 Gene3D - 391 478 IPR036397 GO:0003676
Vium6333g00002 995 FunFam DNA polymerase 90 265 - -
Vium6333g00002 995 SUPERFAMILY Ribonuclease H-like 110 441 IPR012337 -
Vium6333g00002 995 NCBIfam DNA polymerase (pol2) 456 866 - -
Vium6333g00002 995 ProSitePatterns DNA polymerase family B signature. 649 657 IPR017964 GO:0000166|GO:0003676
Vium6333g00002 995 FunFam DNA polymerase 550 602 - -
Vium6333g00002 995 Gene3D - 723 878 IPR042087 -
Vium6333g00002 995 Gene3D Helix hairpin bin 550 602 - -
Vium6333g00002 995 MobiDBLite consensus disorder prediction 1 23 - -
Vium6333g00002 995 CDD POLBc_delta 476 869 - -
Vium6333g00002 995 Pfam DNA polymerase family B, exonuclease domain 119 366 IPR006133 -
Vium6333g00002 995 Gene3D - 294 374 IPR036397 GO:0003676
Vium6333g00002 995 FunFam DNA polymerase 723 879 - -
Vium6333g00002 995 Gene3D Palm domain of DNA polymerase 479 706 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6333g00002 Vium-Chr6333 13244 28766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6333g00002 363 995 Core DNA Replication Machinery Family AT5G63960 80.095 0.0 1044
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6333g00002 K02327 - egt:105976826 1546.18