Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6332g00003 ATGATTTCTTCTGGAATTAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTTTTCGTCTGCACCAGGCTCATATGTGCTCGAATTCACTTGAATGCTGCAAGGAGATCCTTTCCTATTGTCTCCAGATCCAATCTCAGCATGATGGAGCGGGGTTCTCATGGTCTTGAACGCGTGACTGTAGCCAAATTTCCAACAAAGAAGTATAGTGACAAGTTTTTTGCTGCTGCAGAAAATTCTCAATGCACAGTTTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATTCTCCCTTTCTGTGGACACTCCTTCCATGTGACCTGCATAGACCTATGGCTGCAGCAGAATTCCACATGTCCTGTTTGTCGAATATCGTTGCGCGAATTTCCAGATAGAAAGTGGTTAATGCAACCCTTGTTCAGCTCTGCTCTGCAACCTGGTATAGAATCCTTTGACACGCATCATTATCACTGTATGATGGATGATAATGGATTATCATCAAGAACCCCTGACAACCATGGGGTGAATCCTGTGGAAGAAGATCATTTTCCATCTGAGGTTGGTGGAGCAGTTCCTATGGACAATATCACATGTTTAAGTGAGGTTGACTTCATTAAAGATGAAGGGAAGAAGCATGTAGAGAGTCCATCAAACTTCCAGAATTGA 684 0.4357 MISSGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNAARRSFPIVSRSNLSMMERGSHGLERVTVAKFPTKKYSDKFFAAAENSQCTVCLSEYQGEDMLRILPFCGHSFHVTCIDLWLQQNSTCPVCRISLREFPDRKWLMQPLFSSALQPGIESFDTHHYHCMMDDNGLSSRTPDNHGVNPVEEDHFPSEVGGAVPMDNITCLSEVDFIKDEGKKHVESPSNFQN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6332g00003 227 PANTHER OS11G0150450 PROTEIN 1 185 - -
Vium6332g00003 227 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
Vium6332g00003 227 CDD RING-H2_EL5-like 86 129 - -
Vium6332g00003 227 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Vium6332g00003 227 SMART ring_2 87 128 IPR001841 -
Vium6332g00003 227 Pfam Ring finger domain 86 129 IPR001841 -
Vium6332g00003 227 SUPERFAMILY RING/U-box 81 135 - -
Vium6332g00003 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6332g00003 Vium-Chr6332 15880 19077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6332g00003 45 136 C3H Transcription Factor Family AT4G10150 42.391 1.99e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6332g00003 - - gmx:100794979 435.261