Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6332g00002 ATGCTGCGTATTCTCCCTTTCTGTGGACACTCCTTCCATGTGACCTGCATAGACCTATGGCTGCAGCAGAATTCCACATGTCCTGTTTGTCGAATATCGTTGCGCGAATTTCCAGATAGAAAGTGGTTAATGCAACCCTTGTTCAGCTCTGCTCTGCAACCTGGTATAGAATCCTTTGACACGCATCATTATCACTGTATGATGGATGATAATGGATTATCATCAAGAACCCCTGACAACCATGGGGTGAATCCTGTGGAAGAAGATCATTTTCCATCTGAGGTTGGTGGAGCAGTTCCTATGGACAATATCACATGTTTAAGTGAGGTTGACTTCATTAAAGATGAAGGGAAGAAGCATGTAGAGAGTCCATCAAACTTCCAGAATTGA 390 0.4333 MLRILPFCGHSFHVTCIDLWLQQNSTCPVCRISLREFPDRKWLMQPLFSSALQPGIESFDTHHYHCMMDDNGLSSRTPDNHGVNPVEEDHFPSEVGGAVPMDNITCLSEVDFIKDEGKKHVESPSNFQN 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6332g00002 129 ProSiteProfiles Zinc finger RING-type profile. 8 31 IPR001841 -
Vium6332g00002 129 PANTHER OS11G0150450 PROTEIN 1 87 - -
Vium6332g00002 129 Pfam RING-H2 zinc finger domain 8 31 IPR024766 GO:0008270
Vium6332g00002 129 SUPERFAMILY RING/U-box 2 37 - -
Vium6332g00002 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 39 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6332g00002 Vium-Chr6332 11648 12037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6332g00002 2 34 C3H Transcription Factor Family AT4G10150 60.606 3.08e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6332g00002 - - vum:124842952 282.337