Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6325g00002 ATGTCCATCTTGCCCTCACAAACCCAAGCGTCATCTTCGTCTTCTTCGTCAGCGCCATCTCCTAACCCTATTCCCCAACATGGCAGCGGAAGCCCTCTTCCTCAACAACCCTTCCCTTACCTCTCACCCCCACTCCACCACGCGCTCGGATCTCTCCAGATCTCCGGTATCGCAGGTTCTTCGACTCAAGCTACTGAAGATTCTGGTGGATCTTCCGAAAAGGTGACAGAATTAGGGTCTCCAAGTGGAGTGACGGTTTCACCTCAGCAAAACCCTAGAACACGTTCTAGGATTCACGGAGGAAGACGGGCAGGAATGGTTTCTTCTCATAGAAACCAACAAGCTCCTGGGTCCGTGGGTTCTCATGGAAGTACCCCTTTGGCAGGGAGGAAAGCTCAGACTGTGAACGGAAATTACTTGCTGAATTTTCAATATGACCCAATATCCCGTTCTCAACCCCGGGGTCCCCCTCCCTCCCCTGCAGCAAGAAGGCATTGGAAGAGGAAGCCATACAATAAAGATTTGTTTTTGCAGGCAAATTACAAGTTCATGGTGTTAGATTCGGGAAATTACTCTCCTGAGTCGATGGATCCTGATAAAATGTTGCAGTGGGAAGACATTATATGTGTGACATATTTGACCCCCTTCTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCACTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTAATGATGGGTGAAGAGGATCACAAAGGCGATATCTGGAAAAGGTGTCCTCTGTGCTTTGTCATGACATCTGCCAAGGATTTATATACAGTTCACATCACAAATGTCAAACAGTATCAAGTAGGAGAAAATGTTGAGTTCACCTTTTTAACTCGGAAAAAGGACTCATTTACTCTGACAAGTAAAAATAAACAAGAGACAAATATCATATCATTTGGTAATGGACACTTCTGTGATCCCTTTTCAAAGTTTACTCTTACATCAGATGTAGATCTCTCAGTGAGGCATTCAATATCTGATCTAGATGGCTGGCTGGCCAGAGCAGATTCTGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCCATGCAGCAACTGGAACAGAGGAAGTGGCATTGGAATGAGCAAAAGTCTCATGACAGTGAAAATTCTAAGCCCATTGATCATGCACATCAGATACAATCCATGGTCGTAAATTCTATGGATACTGATGATGAAAACTGTTCTAATGGGTCAAAAACTTCCTCTACTGATTACAGCGACCAAATTAAGGTTTCAATGCTGGAAAAGTCAACTGCTGGAGCCTGTTCTAACCAAACTTTGAATGTGGAGAAAGAATTAATAGAGCAACAAATGAATTTATGTTCTTCATATGAGGAGAAGAATAGTATTCAAAGGCCAGCGGATGATGATGTTGTTGAAGAAATGAAGGGAAATGATTCATATAGTTTTTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCGATGAACATGAAGTGTTTGCTCCACCATTTTGGGAGCTATGATATGCTGCCACACAGAATAAATGGAAGGATTCTACAATTGGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGATATCGATTCCTAAGTCATTTTCCGTTAACCACAACATTTCAGCTTTGTGAAGTTGATTTGAGTGAGTTGTTACCTCCTGAAGCACTGGCTCCATTTATGGATGAAATAAAGAAACGTGCAAATCAGAGAAAACAACTTGCAAAAAAGGAACGGCAGGAAAAAATAAGGGCTGAAGCTACAGGTACTACGCTTCCCATATCATTTAGTAGTCAGCTTACATCTCATGATGATCCTCCAGCATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCAACTGTTTCCTCAAGTCCTCCCGTAGCTGGGGAGAGAAAATCGTTCTCGAATGTCACGAGACTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTGCAAATTCAAGAAACTAGTGGTCTACACAAAAATAATACGACAATTGATTCTTCTGCTCCAACAGGTTCGAGAAACGGGGAGACACAGTCATACTCCAATGTTATATCAAGAGCAGAATCAAATATAAGCTCGAATGCACCAAAGACTAATGAGTTGGGGAAGAAAGGTAAAAAGCAAAATCGAGTTCTTCTATCAACAGCTGGAGGTAGACGTTATTGA 2229 0.4275 MSILPSQTQASSSSSSSAPSPNPIPQHGSGSPLPQQPFPYLSPPLHHALGSLQISGIAGSSTQATEDSGGSSEKVTELGSPSGVTVSPQQNPRTRSRIHGGRRAGMVSSHRNQQAPGSVGSHGSTPLAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPSPAARRHWKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDIWKRCPLCFVMTSAKDLYTVHITNVKQYQVGENVEFTFLTRKKDSFTLTSKNKQETNIISFGNGHFCDPFSKFTLTSDVDLSVRHSISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKWHWNEQKSHDSENSKPIDHAHQIQSMVVNSMDTDDENCSNGSKTSSTDYSDQIKVSMLEKSTAGACSNQTLNVEKELIEQQMNLCSSYEEKNSIQRPADDDVVEEMKGNDSYSFYQAADGQHLILHPMNMKCLLHHFGSYDMLPHRINGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSELLPPEALAPFMDEIKKRANQRKQLAKKERQEKIRAEATGTTLPISFSSQLTSHDDPPAFSMDDFEALGNSTVSSSPPVAGERKSFSNVTRLGFAAAHDSPSLQIQETSGLHKNNTTIDSSAPTGSRNGETQSYSNVISRAESNISSNAPKTNELGKKGKKQNRVLLSTAGGRRY 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6325g00002 742 PANTHER RING FINGER 10 FAMILY MEMBER 63 742 IPR039739 -
Vium6325g00002 742 MobiDBLite consensus disorder prediction 146 165 - -
Vium6325g00002 742 MobiDBLite consensus disorder prediction 25 41 - -
Vium6325g00002 742 FunFam RING finger protein 10 213 281 - -
Vium6325g00002 742 SMART ring_2 220 266 IPR001841 -
Vium6325g00002 742 MobiDBLite consensus disorder prediction 678 729 - -
Vium6325g00002 742 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Vium6325g00002 742 Coils Coil 579 603 - -
Vium6325g00002 742 MobiDBLite consensus disorder prediction 54 95 - -
Vium6325g00002 742 MobiDBLite consensus disorder prediction 1 24 - -
Vium6325g00002 742 Pfam Zinc finger, C3HC4 type (RING finger) 220 266 IPR018957 GO:0046872
Vium6325g00002 742 CDD RING-HC_RNF10 218 275 - -
Vium6325g00002 742 ProSiteProfiles Zinc finger RING-type profile. 220 266 IPR001841 -
Vium6325g00002 742 SUPERFAMILY RING/U-box 219 270 - -
Vium6325g00002 742 MobiDBLite consensus disorder prediction 107 126 - -
Vium6325g00002 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 302 IPR013083 -
Vium6325g00002 742 MobiDBLite consensus disorder prediction 1 126 - -
Vium6325g00002 742 MobiDBLite consensus disorder prediction 678 720 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6325g00002 117 693 C3H Transcription Factor Family AT3G26730 54.195 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6325g00002 K26979 - gmx:100818033 1195.26