Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6322g00001 ATGAAACTTTCATCAGCAGGTTTTAGTCCTCCACCCCAAGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCACTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTAGTATATTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACCAACAGGGAGGTGGATGGCCATATACCAAATTATCCAAGCTTACCGCCTCAGCTTATATGTCAACTTCATAACGTGACTATGCATGCAGATAATGAGACTGATGAAGTATATGCTCAGATGACTTTGCAACCTCTGAGTCCTCAAGAGCAGAAAGAGGCATACCTTCCAGCGGAGTTAGGCACTCCAAGTAAACAGCCAACAAACTACTTTTGCAAAATTCTGACTGCCAGTGACACCAGCACTCATGGTGGATTTTCTGTTCCTCGTAGGGCAGCTGAAAAAGTTTTTCCTCCTTTGGACTTTTCACAACAGCCTCCCGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGAGGTCAGCCTAAAAGGCATCTACTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGGCTTGTTGCTGGTGATTCAGTTCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGTCCTCAACCTGTGATGCCTTCATCAGTCTTGTCCAGTGATAGTATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCGACTAACAGCCGTTTCACCATCTTTTATAACCCAAGAGCTAGCCCATCGGAATTTGTTATACCTTTAGCGAAGTATGTTAAAGCTGTATATCATACTCGTGTGTCTGTCGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCTAGTATTCGTCGATACATGGGCACAATAACTGGAATTAGTGACCTGGACTCTGTTCGGTGGCCAAATTCTCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCCCGGGTTTCTTTATGGGAAATTGAGCCATTAACTACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTCAAGAGACCATGGCCTCCAGGAATGCCTTCATTCAATGGCTTGAAGGATGATGATTTTGGTTTAAATTCTTCACTAATGTGGCTTCGAGACTCAGACAGAGGTCTTCCATCTCTTAATTTTCCGGGAATTGGTGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCAATGGTGAACTATCAAACAGACGTGTACCAAGCTATGGCTGCCGCTGCACTTCAGGATATGTGGAGTTCAGATCCTTCCAAACAACATCCTACTTCCTTACTTCAATTTCAGCAACCACAGAACTTCCTGAATAGGACTTCTCCCACAGTGCAGACTCAGATCTTGCAGCAATCTCAATCTCAGCAATCGTTTCCAAATAGTCAAGAAATACCACATCCATCTCAATCTCAGGCTCAGACTCTAACACATTTTCAGCAGCATTTGCAGCATCAGCATTCATTCAATAATCAGAATCAGCATCATCTTCTACAGCAGCAACAACAGCAGCAACAATCACAACAACCGCAGCAGCAACAACAGCAACTGCAGCAGCAACAAGTGATTGATCATCAGCAGATTTCAAGTGCTGTCTCTACAATGTCTCAGTTTGTTTCAGCACCTCAATCCCAATCGCCACCCATGCAAGCTATCTCTTCACTGGGACATCAGCAGAGTTTTTCTGATTCAAACGGGAACCCTGTAACTAATGCTATTGTTTCTCCCCTGCATAGTATTTTGGGTTCATTTCCCCAGGATGAAACATCTCACCTTCTCAATCTTCCTAGAACCTCATGGGTTCCTGTTCAACCTTCAACTGCATGGCCACCCTCCAAACGTGTTGCAGTGGATCCTCTCCTTCCTTCTGGGGCATCTCAATGTGTTCTGCCTCAAGTGGAACAGTTAGGGCAACCACAGAGTACCATGGCTCAAAATGCAATTACATTGCCACCCTTTCCTAGTAGAGAGTGTGCTATAGAAGGAAGCAGTGATCCGCAAAATCATATTTTGTTTGGAGTAAATATAGAGCCCTCATCACTGCTAATGCATAATGGGTTGTCAAGCCTCAAGGGAGTTAGCAGCAACTGTGGCCCACCAACTATACCTTTCCAATCATCTAATTACCTGAACACCACAAGCACTGATTCTTCAATGAATCCTGGAATGGCACACAATATTGGTGAGTCGGGCTTCCTGCAAACCCCAGAAAATGGAGGGCAAGGAAACCCACCGATCAAAACCTTTGTAAAGGTTTATAAGTCAGGGTCCTTTGGAAGATCATTGGATATTACAAAATTTACCAGCTACCATGAGCTACGCGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGCCTTGAGCTTCTTAACTCAGTCCCAATCCAAAGGCTCTCTAGTGGCGTGTGTGATGACTATGCAGGCCATGAGGACCCAAGAAGTATTAGCACTGGGATAACAACTGTGGGTTCTTTAAACTACTGA 2745 0.4525 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADNETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSIRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGMPSFNGLKDDDFGLNSSLMWLRDSDRGLPSLNFPGIGVSPWMQPRLDPSMVNYQTDVYQAMAAAALQDMWSSDPSKQHPTSLLQFQQPQNFLNRTSPTVQTQILQQSQSQQSFPNSQEIPHPSQSQAQTLTHFQQHLQHQHSFNNQNQHHLLQQQQQQQQSQQPQQQQQQLQQQQVIDHQQISSAVSTMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPVTNAIVSPLHSILGSFPQDETSHLLNLPRTSWVPVQPSTAWPPSKRVAVDPLLPSGASQCVLPQVEQLGQPQSTMAQNAITLPPFPSRECAIEGSSDPQNHILFGVNIEPSSLLMHNGLSSLKGVSSNCGPPTIPFQSSNYLNTTSTDSSMNPGMAHNIGESGFLQTPENGGQGNPPIKTFVKVYKSGSFGRSLDITKFTSYHELRGELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSSGVCDDYAGHEDPRSISTGITTVGSLNY 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6322g00001 914 Gene3D - 291 363 - -
Vium6322g00001 914 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vium6322g00001 914 SMART B3_2 127 229 IPR003340 GO:0003677
Vium6322g00001 914 ProSiteProfiles PB1 domain profile. 781 865 IPR000270 GO:0005515
Vium6322g00001 914 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium6322g00001 914 SUPERFAMILY CAD & PB1 domains 780 857 - -
Vium6322g00001 914 FunFam Auxin response factor 291 363 - -
Vium6322g00001 914 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Vium6322g00001 914 Gene3D - 125 228 IPR015300 -
Vium6322g00001 914 FunFam Auxin response factor 125 229 - -
Vium6322g00001 914 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 870 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium6322g00001 914 MobiDBLite consensus disorder prediction 477 554 - -
Vium6322g00001 914 FunFam Auxin response factor 777 870 - -
Vium6322g00001 914 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vium6322g00001 914 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vium6322g00001 914 Gene3D - 778 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6322g00001 Vium-Chr6322 12530 21469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6322g00001 1 483 B3 DNA Binding Superfamily AT1G30330 84.631 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium6322g00001 B3 2.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6322g00001 - - gmx:100777789 1602.03