Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium631g00002 ATGGCTGCCACTGCTGCAGGCATAGCTTCGTTGTTTTCTTCTTCCATTAACAACATCAAATGTCTTCGTTCCAAGCACTGCTCCATGATGGATCCCCTTATGACAGCAATGCCGTCAAACCGCATGTCACACTTGGTGGAACCTTTGTCCATCGGAGGTACCATGTCGCATAGGTTGTGGGGCCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGCTGGTTTCTGCGGATGATGCTGGTTTCGTTGAAGAAGAGAAAGTGGAGGATAATGAAGGGGAAGTGGTGGCAGAACAAGACTCAGATGAATCCTTTGCTAGCACTAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCATACTTGCAGGGCTAATTCAGGATTATGGTAGCGCTGAACTAATTGAGGTTCTTTACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGACTGTAATACAGTGATAGAAAATCTTGACGGAAAAGAATTCATGGGCAGAACCCTGAGGGTGAACTTCTCTAACAAACCAAAAGCAAAAGAACCCTTGTACCCTGAAACTGAGCATAAACTCTTTGTTGGGAATCTGTCATGGTCAGTAACTAATGAGATTTTGACACAAGCCTTTCAAGAATATGGAACGGTGGTTGGAGCTAGGGTCTTATATGATGGAGAAACTGGAAGGTCACGTGGCTATGGCTTTGTTTGCTTTTCGACAAAAGCAGAGATGGAATCTGCTCTCGAAGCCTTGAATGATGTGGAACTAGAAGGAAGGGCTATGCGTGTGAGTTTGGCTCAAGGAAAACGTGCACAAGGCTAA 846 0.4444 MAATAAGIASLFSSSINNIKCLRSKHCSMMDPLMTAMPSNRMSHLVEPLSIGGTMSHRLWGPRISAAVAQEELVSADDAGFVEEEKVEDNEGEVVAEQDSDESFASTKLYFGNLPYSVDSAILAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNTVIENLDGKEFMGRTLRVNFSNKPKAKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKAEMESALEALNDVELEGRAMRVSLAQGKRAQG 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium631g00002 281 FunFam 28 kDa ribonucleoprotein, chloroplastic 189 280 - -
Vium631g00002 281 SUPERFAMILY RNA-binding domain, RBD 101 188 IPR035979 GO:0003676
Vium631g00002 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Vium631g00002 281 PANTHER OS02G0815200 PROTEIN 59 279 - -
Vium631g00002 281 CDD RRM2_NsCP33_like 199 274 - -
Vium631g00002 281 SMART rrm1_1 108 181 IPR000504 GO:0003723
Vium631g00002 281 SMART rrm1_1 199 272 IPR000504 GO:0003723
Vium631g00002 281 Gene3D - 189 281 IPR012677 -
Vium631g00002 281 Gene3D - 69 188 IPR012677 -
Vium631g00002 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723
Vium631g00002 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 269 IPR000504 GO:0003723
Vium631g00002 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Vium631g00002 281 SUPERFAMILY RNA-binding domain, RBD 192 278 IPR035979 GO:0003676
Vium631g00002 281 FunFam 31 kDa ribonucleoprotein, chloroplastic 69 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium631g00002 Vium-Chr631 75690 78200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium631g00002 81 277 Eukaryotic Initiation Factors Gene Family AT3G16380 31.481 8.03e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium631g00002 - - gmx:100820203 464.151