Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium6319g00002 | ATGTCCACAATGCTGAAATCAGGCATGAAAATTGAGGAGAAAAAACTGAAGAAAACAGCACAGGCCAGCTCCAGAAAAGGGTGTATGAGAGGTAAAGGAGGTCCCGAGAATGCCAGTTGCACCTTCAAAGGTGTGAGACAGAGAACCTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAATCGTGGTGCTAGACTCTGGCTAGGGACATTTGAAACCTCTCAGGACGCTGCTTTGGCTTATGATGCTGCAGCACGTAAGCTTTACGGCCCTGATGCCAAACTCAATTTACCAGACCATCCTGTGCCCCCAGCGTCTCACTTTCCACCACCACCACCACCTCCTGTTATCAACACTCCAACTCCTGATATGGAGAATCTGCAACAGCCTCTGATGCAAAACAACCTAGACATTCCAACTTGTTCTAATTTCAATTTCAATCCTGCAGTTTCCATGGCTTCTCACGAAGTTGGAGTCACTCCAATTTACACCAGTGATTGCATCGTGTCTCTTCCCTTGGACACCAATCCTAAGCCAATTGCAACCTACACAAAGCCTGAGGGGATTGAGGGAGAGTTTTCTCCATCTTGGGAGACAATGACCGAGACTTTACCTGTTTTTGATGATTCTATCTGGGCCGAAGCTGCTATGTCTCTAGATCTTCCTCTAATTGCAGCAGAGAATGCGATTTACACACCGGAGAACAACAATTTGGCGGCCGATGTGGATATGTGGGACCCTCAAACTCCATGGTGCATGTAA | 762 | 0.4751 | MSTMLKSGMKIEEKKLKKTAQASSRKGCMRGKGGPENASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFETSQDAALAYDAAARKLYGPDAKLNLPDHPVPPASHFPPPPPPPVINTPTPDMENLQQPLMQNNLDIPTCSNFNFNPAVSMASHEVGVTPIYTSDCIVSLPLDTNPKPIATYTKPEGIEGEFSPSWETMTETLPVFDDSIWAEAAMSLDLPLIAAENAIYTPENNNLAADVDMWDPQTPWCM | 253 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium6319g00002 | 253 | SMART | rav1_2 | 41 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Vium6319g00002 | 253 | FunFam | Ethylene-responsive transcription factor 2 | 40 | 99 | - | - | |
Vium6319g00002 | 253 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 15 | 115 | - | - | |
Vium6319g00002 | 253 | MobiDBLite | consensus disorder prediction | 15 | 36 | - | - | |
Vium6319g00002 | 253 | Pfam | AP2 domain | 41 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Vium6319g00002 | 253 | CDD | AP2 | 40 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Vium6319g00002 | 253 | PRINTS | Ethylene responsive element binding protein signature | 64 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Vium6319g00002 | 253 | PRINTS | Ethylene responsive element binding protein signature | 42 | 53 | IPR001471 | GO:0003700|GO:0006355 | |
Vium6319g00002 | 253 | SUPERFAMILY | DNA-binding domain | 41 | 99 | IPR016177 | GO:0003677 | |
Vium6319g00002 | 253 | ProSiteProfiles | AP2/ERF domain profile. | 41 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Vium6319g00002 | 253 | Gene3D | AP2/ERF domain | 41 | 99 | IPR036955 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium6319g00002 | Vium-Chr6319 | 13466 | 15207 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium6319g00002 | 1 | 119 | AP2-EREBP Transcription Factor Family | AT1G75490 | 66.116 | 1.91e-51 | 165 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vium6319g00002 | AP2 | 3.3e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium6319g00002 | - | - | gmx:100790057 | 320.857 |