Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6319g00002 ATGTCCACAATGCTGAAATCAGGCATGAAAATTGAGGAGAAAAAACTGAAGAAAACAGCACAGGCCAGCTCCAGAAAAGGGTGTATGAGAGGTAAAGGAGGTCCCGAGAATGCCAGTTGCACCTTCAAAGGTGTGAGACAGAGAACCTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAATCGTGGTGCTAGACTCTGGCTAGGGACATTTGAAACCTCTCAGGACGCTGCTTTGGCTTATGATGCTGCAGCACGTAAGCTTTACGGCCCTGATGCCAAACTCAATTTACCAGACCATCCTGTGCCCCCAGCGTCTCACTTTCCACCACCACCACCACCTCCTGTTATCAACACTCCAACTCCTGATATGGAGAATCTGCAACAGCCTCTGATGCAAAACAACCTAGACATTCCAACTTGTTCTAATTTCAATTTCAATCCTGCAGTTTCCATGGCTTCTCACGAAGTTGGAGTCACTCCAATTTACACCAGTGATTGCATCGTGTCTCTTCCCTTGGACACCAATCCTAAGCCAATTGCAACCTACACAAAGCCTGAGGGGATTGAGGGAGAGTTTTCTCCATCTTGGGAGACAATGACCGAGACTTTACCTGTTTTTGATGATTCTATCTGGGCCGAAGCTGCTATGTCTCTAGATCTTCCTCTAATTGCAGCAGAGAATGCGATTTACACACCGGAGAACAACAATTTGGCGGCCGATGTGGATATGTGGGACCCTCAAACTCCATGGTGCATGTAA 762 0.4751 MSTMLKSGMKIEEKKLKKTAQASSRKGCMRGKGGPENASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFETSQDAALAYDAAARKLYGPDAKLNLPDHPVPPASHFPPPPPPPVINTPTPDMENLQQPLMQNNLDIPTCSNFNFNPAVSMASHEVGVTPIYTSDCIVSLPLDTNPKPIATYTKPEGIEGEFSPSWETMTETLPVFDDSIWAEAAMSLDLPLIAAENAIYTPENNNLAADVDMWDPQTPWCM 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6319g00002 253 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Vium6319g00002 253 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Vium6319g00002 253 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 115 - -
Vium6319g00002 253 MobiDBLite consensus disorder prediction 15 36 - -
Vium6319g00002 253 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Vium6319g00002 253 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Vium6319g00002 253 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Vium6319g00002 253 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Vium6319g00002 253 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Vium6319g00002 253 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Vium6319g00002 253 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6319g00002 Vium-Chr6319 13466 15207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6319g00002 1 119 AP2-EREBP Transcription Factor Family AT1G75490 66.116 1.91e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium6319g00002 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6319g00002 - - gmx:100790057 320.857