Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6318g00003 ATGCCGAACCAAGGTATCAGCAGCTACCTTAAAGAACCTCGTCTTGTGGCCAGAAAGTTCTTGGCCAGACCTCAACATGAGGGTGTTGGGGCAGTTGTTAGAAGAAGCATAGGGAGATTTGAGCTCAAGAACTTCGATCCTTTCCTTGTCTTGGATGAATTCTCAGTCACGGCTCCTGCTGGGTTTCCTGATCATCCACACAGAGGATTTGAGACAGTCACATACATGTTGCAGGGAGCCATAACACATGAAGATTTTGATGGACGAAAGGGAACAATTGAAGCTGGTGACTTGCAGTGGATGACTGCAGGAAGAGGGATAGTTCACTCAGAAATGCCTGCAGCTCAAGGAACTCAAAAGGGTCTTCAGCTGTGGATCAACCTCTCTTCAAAACATAAAATGATTGAGCCAAGGTACCAAGAAATGCTGAGCAAGGACATAGCAGAAACTATGATAGATGGAATCAAAGTCAGAGTGATAGCAGGAGAAGCTCTTGGAATAAAGTCTCCAATCTACACAAGAACACCAACCATGTACTTGGATTTTTCCCTCAAACCTGGTGCTCACTTGCAGCAACTTATACCAAAATCTTGGAATGCTTTTGTGTACATATTGGAAGGAGAGGGTGTTTTTGGGAACCAAAAGTCTCAACCTGTGACTTCTCATCATATACTTCTTCTTGGTTCTGGGGATGGCCTTGAAGCATGGAACAAATCTTCAAAGGTTCTTAGGTTCATTTTGGTTGGAGGGGAACCTTTGGGGGAACCTGTGGTGCAATTTGGACCTTTTGTGATGAACACTCAAGAAGAGATTGACCAAACAATTGATGATTTTGAGAATTATACCAATGGATTTGAGAAAGCAAGACACTGGAGATCTGAAACTTCACTTAGCCTTGATTATTGA 906 0.4327 MPNQGISSYLKEPRLVARKFLARPQHEGVGAVVRRSIGRFELKNFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFDGRKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKHKMIEPRYQEMLSKDIAETMIDGIKVRVIAGEALGIKSPIYTRTPTMYLDFSLKPGAHLQQLIPKSWNAFVYILEGEGVFGNQKSQPVTSHHILLLGSGDGLEAWNKSSKVLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYTNGFEKARHWRSETSLSLDY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6318g00003 301 CDD cupin_pirin_C 176 252 - -
Vium6318g00003 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Vium6318g00003 301 PANTHER PIRIN-RELATED 10 295 IPR012093 -
Vium6318g00003 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Vium6318g00003 301 FunFam pirin 27 165 - -
Vium6318g00003 301 CDD cupin_pirin_N 31 128 - -
Vium6318g00003 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Vium6318g00003 301 Pfam Pirin 33 126 IPR003829 -
Vium6318g00003 301 PIRSF Pirin 12 292 IPR012093 -
Vium6318g00003 301 Gene3D Jelly Rolls 27 279 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6318g00003 Vium-Chr6318 12708 15933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6318g00003 13 289 Calmodulin-binding Proteins AT3G59220 59.140 8.01e-124 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6318g00003 K06911 - gmx:100811930 588.186