Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6315g00002 ATGTCAGCAAACAATTCTTTGCACGTGGAATTATCGAAGAAGACTTCGTTTCTTGGATTGAAATTATGGGTTTTGATTGGGATTGGTGTTGGTGTTTTTATAGTTCTGATTCTTTGTGCATTATCTGTATGGGTGATGTTTCGGAGAAAGTCTAGGAGATCTCTGGACAAGTTCTCTTTGTCACAAATACCGCATGTCTCAAAAGACATCAGAGTTGACAAGGTTGGGGTGCAGACTTCTTATGATCAAGCAGAAAGTGTAGCTATTCCTGTTCATGACAAAGCAAGTGAGAACAATTCTGACAAGTTCTTAGTTCATTTGCGCAAAAGCAAATCCAGCGATGCTGATAATATCAGTCAGTGCAGCTCAGTTTATCATCACGAGAGAGGATTTAGTTCAATGTCAGGGGAAGAAGGAAGCTCCGGCACTGTTAAGAAGCAGTCTGCATTGGCATTTGGAGGAGTGATAACTGCCTCTCCTCTAGTTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGTCACTGGTTCACACTAAGAGATCTGGAACTTGCAACTAGTCGCTTCTCTCCAGAAAATGTGATTGGTGAGGGTGGATATGGGGTTGTTTACAGGGGAAGATTGATCAATGGATCCGAGGTGGCAGTTAAGAAAATTCTTAACAACTTGGGACAAGCAGAGAAAGAGTTCAGGGTGGAAGTGGAAGCTATTGGCCATGTGAGACATAAAAATCTTGTGCGCTTACTTGGTTATTGCGTAGAAGGAGTTCACAGGTTACTGGTGTATGAATATGTGAACAATGGTAATTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGATACTTACCTGGGAAGCGCGGATGAAAGTTATAACTGGCACAGCCAAAGCACTGGCTTATTTACATGAAGCAATAGAACCGAAAGTCGTTCACCGGGATATCAAGTCTAGCAACATATTGATTGATACCGAGTTCAATGCAAAAGTTTCTGACTTTGGCTTGGCCAAACTTTTGGACTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACGTTTGGTTATGTGGCACCAGAATATGCCAATACGGGTTTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGAAGGGATCCTGTGGACTATTCACGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGATGAGAAGGGCCGAGGAAGTTGTGGATTCAAGGCTTGAAGTGACACCATCAACACGTGCTTTAAAGCGTTCTCTTCTGGTTGCACTTAAGTGTGTTGATCCTGAAGAAGAAAAGAGGCCTAAAATGAGTCAGGTTGTGAGAATGCTTGAAGCCGATGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACAGCCAGCATGGAAATTGAGTATCTGAAGGATATTTCTGGCCCATCTGATGCTGAAAAGGTGAAGGGTTCTGAAGGCCATGCACCAGAAACAACTCAAGCGTAG 1533 0.4331 MSANNSLHVELSKKTSFLGLKLWVLIGIGVGVFIVLILCALSVWVMFRRKSRRSLDKFSLSQIPHVSKDIRVDKVGVQTSYDQAESVAIPVHDKASENNSDKFLVHLRKSKSSDADNISQCSSVYHHERGFSSMSGEEGSSGTVKKQSALAFGGVITASPLVGLPEISHLGWGHWFTLRDLELATSRFSPENVIGEGGYGVVYRGRLINGSEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGAMSQQGILTWEARMKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDTEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGRDPVDYSRPANEVNLVEWLKMMVGMRRAEEVVDSRLEVTPSTRALKRSLLVALKCVDPEEEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIEYLKDISGPSDAEKVKGSEGHAPETTQA 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6315g00002 510 PANTHER OS01G0323000 PROTEIN 1 481 - -
Vium6315g00002 510 MobiDBLite consensus disorder prediction 488 502 - -
Vium6315g00002 510 FunFam Putative receptor-like protein kinase 170 263 - -
Vium6315g00002 510 CDD STKc_IRAK 194 460 - -
Vium6315g00002 510 MobiDBLite consensus disorder prediction 467 510 - -
Vium6315g00002 510 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6315g00002 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Vium6315g00002 510 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Vium6315g00002 510 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Vium6315g00002 510 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6315g00002 510 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Vium6315g00002 510 MobiDBLite consensus disorder prediction 467 481 - -
Vium6315g00002 510 FunFam Putative receptor-like serine/threonine-protein kinase 264 474 - -
Vium6315g00002 510 Pfam Protein kinase domain 191 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6315g00002 510 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6315g00002 Vium-Chr6315 13909 18627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6315g00002 19 462 Trihelix Transcription Factor Family AT1G70460 39.333 3.54e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium6315g00002 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6315g00002 - - gmx:100813931 909.827