Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6305g00002 ATGCTAAAAAACATGAACAGACACAAGCTGAAACACGCACATCCTCTTGCACAACTTCTTATGATTCTTCTCTTTTTCAACTCCACATGTGCCATTGATTTCGTCTTCAACGGCTTCAACTCCTCTGAAGTATTGCTCTTTGGAAACGCCACCATCGATTCTCGAATTCTAACACTAACACATCATCAAACTTTCTCCATCGGTCGTGCCTTGTACAAGGAAAAAATTCCCACCAAGAAACCAAACTCTTCTTTTGTCTACCCTTTCTCCACCTCTTTCATATTTGCCATGGCACCTTATGAAGACACTCTTCCGGGACATGGCTTGGTTTTCATCTTTACACCTGTCACGGGCATCCAAGGCACAAGTTCTGCACAACACCTTGGTCTGTTCAACCTCACCAACAACGGAAACTCAAACAACCATGTGCTTGGTGTCGAGTTCGATGTGTTCATGAACCAAGAGTTCGATGACATCAACGCCAATCATGTGGGGATTGACATAAACTCTCTCAAATCTTCTGTTTCCAATGATTCTGGATATTGGCAAGATGACGGTGACAGGTCTTTTAAGGAATTGACGCTTAACAGCGGTGAGAATTACCAAGTTTGGATTGACTACGAAGATTCTAGGATGAATGTTACCATGGCACCGGTGGGTAGGAAAAGGCCTAGTAGGCCTTTGTTGAATGTTTCTCTCAACTTATCTGAGGTTTTTGAGGATGAAATGTTTGTTGGGTTTACTAGTGCCACTGGTCAATTAGTTGAGAGTCACAAGATCTTGGGGTGGAGTTTCAGCAATGAGAATATTTCGTTGAGTGATGAACTTATTACTACCGGACTACCGTCTTTTGTTCTTCCAAAGGACTCAATTTTTAAGTCCAAGGGGTTTGTTGCAGGTTTTACTGTTGGAGCTTTCTTAGTTATTTGTGTCTTGGTTTTGTTGGCACTGGTTTTGATTGAGAGGAAGCGTTTGAGAGAAAGGAAGAGGCAGGAAATGGAAGATTGGGAATTGGAGTTTTGGCCACACAGAATGGTGTATGAGGAAATAGAGGCAGCAACAAAGGGGTTCTCTGAGGAGAATGTGATTGGGGTTGGAGGGAATGGGAAAGTCTACAAGGGTGTTCTAAGAGGAGGGGTGGAGATTGCTGTGAAGCGCATTTCTCATGAAAACGATGGCCTGCGAGAATTTCTTGCTGAAGTTTCAAGCCTTGGGAGACTGAAGCAAAGGAATTTGGTGGGATTGAGAGGTTGGTGCAAGAAAGATGTTGGGAGTTTCTTGTTAGTCTACGACTACATGGAAAATGGTAGCTTGGACAAGAGGGTGTTTGATTGTGATGAGAGGAAGATGTTGAGTTATGAGGATAGGATAAGGATTATCAAAGATGTGGCTTTTGCAGTTTTGTACTTGCACGAGGGGTGGGAAGCTAAGGTTCTGCATAGGGACATCAAGGCAAGCAATGTTTTGCTTGATAAGGATATGAATGGAAGGCTAGGGGATTTTGGGTTAGCCAGAATGCACAGCCATGGTCAAGTTGCTAGCACCACAAAATTGGTTGGAACAGTGGGGTACATGGCTCCCGAAGTGTTCAAGACTGGAAGAGCTTCCACTCAGACAGATGTTTACATGTTTGGCATCTTGATTTTTGGAGGTTTTGTGTGGAATGAGACCTCTAGAGAAGGTAAGTCACCTTTGGTGGAGTGGGTTTGGCAAAACTAA 1719 0.4351 MLKNMNRHKLKHAHPLAQLLMILLFFNSTCAIDFVFNGFNSSEVLLFGNATIDSRILTLTHHQTFSIGRALYKEKIPTKKPNSSFVYPFSTSFIFAMAPYEDTLPGHGLVFIFTPVTGIQGTSSAQHLGLFNLTNNGNSNNHVLGVEFDVFMNQEFDDINANHVGIDINSLKSSVSNDSGYWQDDGDRSFKELTLNSGENYQVWIDYEDSRMNVTMAPVGRKRPSRPLLNVSLNLSEVFEDEMFVGFTSATGQLVESHKILGWSFSNENISLSDELITTGLPSFVLPKDSIFKSKGFVAGFTVGAFLVICVLVLLALVLIERKRLRERKRQEMEDWELEFWPHRMVYEEIEAATKGFSEENVIGVGGNGKVYKGVLRGGVEIAVKRISHENDGLREFLAEVSSLGRLKQRNLVGLRGWCKKDVGSFLLVYDYMENGSLDKRVFDCDERKMLSYEDRIRIIKDVAFAVLYLHEGWEAKVLHRDIKASNVLLDKDMNGRLGDFGLARMHSHGQVASTTKLVGTVGYMAPEVFKTGRASTQTDVYMFGILIFGGFVWNETSREGKSPLVEWVWQN 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6305g00002 572 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 319 432 - -
Vium6305g00002 572 ProSiteProfiles Protein kinase domain profile. 357 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6305g00002 572 SUPERFAMILY Protein kinase-like (PK-like) 333 549 IPR011009 -
Vium6305g00002 572 Gene3D - 30 276 - -
Vium6305g00002 572 Pfam Protein kinase domain 358 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6305g00002 572 Gene3D Transferase(Phosphotransferase) domain 1 433 572 - -
Vium6305g00002 572 FunFam L-type lectin-domain containing receptor kinase S.4 30 273 - -
Vium6305g00002 572 FunFam Lectin-domain containing receptor kinase A4.3 433 572 - -
Vium6305g00002 572 Pfam Legume lectin domain 32 270 IPR001220 GO:0030246
Vium6305g00002 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vium6305g00002 572 CDD lectin_legume_LecRK_Arcelin_ConA 32 266 IPR001220 GO:0030246
Vium6305g00002 572 PANTHER - 48 571 - -
Vium6305g00002 572 SMART serkin_6 357 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6305g00002 572 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 274 IPR013320 -
Vium6305g00002 572 Gene3D Phosphorylase Kinase; domain 1 318 432 - -
Vium6305g00002 572 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6305g00002 Vium-Chr6305 17346 19969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6305g00002 27 570 Receptor kinase-like Gene Family AT4G04960 67.213 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium6305g00002 Lectin_legB 1.5e-65 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6305g00002 - - vum:124842909 1098.57