Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6304g00003 ATGGATGAGGATTTCGAATTCCCAAATGCTGGCAACATGGAATTGCCTGAGGAGGAAATGGAGAGTTCCAACCTTAAGGTTGGGGAGGAGAAGGAGATTGGGAAAATGGGACTCAAGAAGAAGCTCCTGAAGGAAGGTGAAGGTTGGGACAGCCCCAACAATGGAGATCAAGTTGAAGTGCATTATACAGGAACCTTGCTTGATGGAACCCAATTTGATTCTAGCCGTGATACGGGTACACCTTTTAAGTTCAACCTTGGCCAAGGGCAAGTGATCAAGGGATGGGATGAAGGTATTAAAACTATGAAGAAAGGTGAGAATGCCCTTTTCACCATACCCCCAGAATTGGCATATGGAGAGTCTGGATCTCCTCCCAATATTCCCCCAAATGCAACTCTGCAGTTTGATGTGGAATTGCTGTCTTGGACAAGTGTGAAAGACATATGCAAGGATGGAGGAATTTTGAAGAACATAATTACTGAAGGGGAGAAATGGGATTATCCTAAGGACCTGGATGAAGTGTTTGTCAAGTATGAAGCTCGGCTTGAAGATGGAACAGTCATTTCAAAATCTGATGGGGTGGAGTTCATTGTGGAAGAGGGGTATTTCTGTCGTGCCTTGGCTGAGGCTGTGAAAACAATGAGGAAGGGAGAGAAAGTTCTCTTGAATGTGAAGCCACAATATGCATTTGGTGAGAGTGGAAGGCCAGCATCAGGAGAAGAAGGTGGCGTACCTCCAAATGCTTCGCTTCAAGTGGATTTTGAGTTGGTCTCGTGGAAGAACGTGTCTGACATTACTAAAGATAGGAAGGTTCTCAAGAAAACTTTGAAGGAAGGAGAGGGATATGAACGGCCAAACGATGGAGCTGTAGTTCAAGTGAAACTGATTGGCAAGCTACAAGATGGAACTGTTTTCACTAAGAAGGGCTATGACGATGAACAGCCATTGGAGTTCAAAATTGACGAAGAGCAAGTAATTGATGGACTTGAAAAAGCTGTGAAGAACATGAAGAAAGGTGAAATTGCATTGCTGATCATACAACCTGACTATGCTTTTGGTCCATCTGGGTCCCCTCAGGAATATGCTAGTGTTCCTCCCAATTCAGTTGTGTATTATGAAGTTGAGCTGCTTTCCTTTGTAAAGGAGAAGGAATCATGGGATCTGAATACACCAGAGAAGATTGAGGCAGCTGGGAAGAAAAAGGCAGAAGGGAATGCTTTATTTAAGGTTGGAAAATATGAAAGAGCGTCAAAGAGATATGAAAAGGCCATGAAATTTATTGAATATGATTCTTCCTTCAGTGATGAGGAGAAACAGCAATCCAAGGCATTGAAAATCACATGCAATCTCAACAATGCAGCCTGCAAGCTGAAGCTAAAGGAGTACAAACAAGCAGAAAAGTTGTGTACGAAGGTGTTGGAGCTTGATAGTAGAAATGTAAAAGCATTGTACCGGAGGGCACAAGCATATCTTCATCTTGTGGACTTGGATCTAGCTGAGAGGGACATTAAGAAAGCCCTGGAGATTGAGCCAGAAAACAGGGATGTAAAGATGGAGTACAAAATTTTGAAGCAGAAAGTTAGAGAATTCAACAAGAAGGACGCACAGTTCTATGGCAGCATGTTTGCTAAACTGAATAGACTAGAACAAGCAAGAACAGCAACATCAAAACAGGAGCCTGTGCCAATGACTATTGACAGTAAAGCTTAA 1710 0.4281 MDEDFEFPNAGNMELPEEEMESSNLKVGEEKEIGKMGLKKKLLKEGEGWDSPNNGDQVEVHYTGTLLDGTQFDSSRDTGTPFKFNLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPNIPPNATLQFDVELLSWTSVKDICKDGGILKNIITEGEKWDYPKDLDEVFVKYEARLEDGTVISKSDGVEFIVEEGYFCRALAEAVKTMRKGEKVLLNVKPQYAFGESGRPASGEEGGVPPNASLQVDFELVSWKNVSDITKDRKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFTKKGYDDEQPLEFKIDEEQVIDGLEKAVKNMKKGEIALLIIQPDYAFGPSGSPQEYASVPPNSVVYYEVELLSFVKEKESWDLNTPEKIEAAGKKKAEGNALFKVGKYERASKRYEKAMKFIEYDSSFSDEEKQQSKALKITCNLNNAACKLKLKEYKQAEKLCTKVLELDSRNVKALYRRAQAYLHLVDLDLAERDIKKALEIEPENRDVKMEYKILKQKVREFNKKDAQFYGSMFAKLNRLEQARTATSKQEPVPMTIDSKA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6304g00003 569 FunFam Peptidylprolyl isomerase 147 260 - -
Vium6304g00003 569 SMART tpr_5 480 513 IPR019734 GO:0005515
Vium6304g00003 569 SMART tpr_5 446 479 IPR019734 GO:0005515
Vium6304g00003 569 SMART tpr_5 397 430 IPR019734 GO:0005515
Vium6304g00003 569 Gene3D - 146 260 IPR046357 GO:0003755
Vium6304g00003 569 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Vium6304g00003 569 SUPERFAMILY FKBP-like 34 155 - -
Vium6304g00003 569 FunFam Peptidylprolyl isomerase 385 540 - -
Vium6304g00003 569 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 171 260 IPR001179 GO:0003755
Vium6304g00003 569 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 151 263 - -
Vium6304g00003 569 SUPERFAMILY FKBP-like 147 263 - -
Vium6304g00003 569 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 288 380 IPR001179 GO:0003755
Vium6304g00003 569 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 55 143 IPR001179 GO:0003755
Vium6304g00003 569 Gene3D - 28 145 IPR046357 GO:0003755
Vium6304g00003 569 FunFam Peptidylprolyl isomerase 28 146 - -
Vium6304g00003 569 MobiDBLite consensus disorder prediction 1 31 - -
Vium6304g00003 569 Coils Coil 513 533 - -
Vium6304g00003 569 FunFam Peptidylprolyl isomerase 261 382 - -
Vium6304g00003 569 SUPERFAMILY FKBP-like 263 397 - -
Vium6304g00003 569 Gene3D - 261 382 IPR046357 GO:0003755
Vium6304g00003 569 Gene3D Tetratricopeptide repeat domain 383 540 IPR011990 GO:0005515
Vium6304g00003 569 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 168 256 IPR001179 GO:0003755
Vium6304g00003 569 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 282 377 IPR001179 GO:0003755
Vium6304g00003 569 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 140 IPR001179 GO:0003755
Vium6304g00003 569 Pfam Tetratricopeptide repeat 481 513 IPR019734 GO:0005515
Vium6304g00003 569 SUPERFAMILY TPR-like 392 545 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6304g00003 Vium-Chr6304 20880 24113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6304g00003 25 569 Calmodulin-binding Proteins AT5G48570 73.175 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6304g00003 K09571 - gmx:100810243 1002.66