Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6303g00007 ATGAATGGTAAGTGGTCCTTTGACCATACCCATTTGAAGATGGCTTGGATTCAGCATCAAATCCAACAAAAAGATGGTTACTTGATCTATCCACCACCGGTTTTGCCTCCCCCTTCACCCCCAAGCTGGGGTGCATTTCACAAAGAATCAATGTCTTCGTCATCACCATCATCTCCCTCACCACCCTCACCTTCATCCTCTGGTGCTAGAATTAGTCCTGCTGTGCTTTTCATCATTGTGATTCTGGCTGTTCTATTTTTCATCTCTGGCCTGCTCCACCTGCTTGTTAGATTTCTCATGAAGAACCCTTCTTCCTCAGCATCTTCTCAATCCAATAGGAACCAGGAAAATGCAACCTCTGATGCTCTTCAAAGGCAGCTGCAACAGCTGTTCCATCTTCATGATTCTGGTCTGGACCAGGCTTTTATTGATGGACTTCCTGTTTTCCAATACAAGGAGATAAAGGGGTTGAAGGAGCCATTTGACTGTGCTGTCTGTCTCTGTGAGTTTTCTGAAAAGGATAAACTCAGGTTGCTGCCTATGTGCAGCCATGCCTTTCATATCAGCTGTATAGACACCTGGCTTTTGTCCAACTCCTCATGCCCTCTTTGCAGGGGTACCCTCCTTACTCCTGGCTTTCCCCTTGAAAATCCATTGTTTGATTTTGATGATTTGAGGGATGATAATGGGGAACATGAGTTCACAACTAGGCAGAAAACGATTGAAATTGAAGAAACTGTGGTAGAGAAGGGGGTTTTCCCTGTGAGACTTGGCAAATTCAGAAGGCTTGATGTGGAGGCAGAGGTGGCTGCTGGAGGAGAGACTAGTAGCAATAATTTGGATGCCAGAAGATGTTATTCCATGGGATCTTATCAGTACGTGCTTGGGAATTCAGACCTCAGAATAACCTTGAGCCATGACCGAGAAGGTCGTCATGCACAGTTCTTGAAAGGAAGAGAAAACTTAGAGAGACTTTCAGTTGAGGGGGATATTGAAGGAAAGAAGATTACAAGTGTGTGTAAAGGCGAGAGCTTTTCTGTTTCCAAAATCTGGCAGTGGTCACAGAAGGGAAAATTTTCAGTTTCTTCTGATACCCAGATGAGTATGCCCTCTTCTCTTATCACGGATTTGCCTTGGATGAGAGAAACAAGAAGGACATGA 1161 0.4462 MNGKWSFDHTHLKMAWIQHQIQQKDGYLIYPPPVLPPPSPPSWGAFHKESMSSSSPSSPSPPSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLMKNPSSSASSQSNRNQENATSDALQRQLQQLFHLHDSGLDQAFIDGLPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSSCPLCRGTLLTPGFPLENPLFDFDDLRDDNGEHEFTTRQKTIEIEETVVEKGVFPVRLGKFRRLDVEAEVAAGGETSSNNLDARRCYSMGSYQYVLGNSDLRITLSHDREGRHAQFLKGRENLERLSVEGDIEGKKITSVCKGESFSVSKIWQWSQKGKFSVSSDTQMSMPSSLITDLPWMRETRRT 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6303g00007 386 Pfam Ring finger domain 162 205 IPR001841 -
Vium6303g00007 386 SUPERFAMILY RING/U-box 142 211 - -
Vium6303g00007 386 SMART ring_2 163 204 IPR001841 -
Vium6303g00007 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 210 IPR013083 -
Vium6303g00007 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 66 351 - -
Vium6303g00007 386 MobiDBLite consensus disorder prediction 41 66 - -
Vium6303g00007 386 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Vium6303g00007 386 FunFam RING-H2 finger protein ATL46 125 210 - -
Vium6303g00007 386 CDD RING-H2_EL5-like 162 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6303g00007 Vium-Chr6303 34859 37225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6303g00007 60 358 C3H Transcription Factor Family AT2G18650 41.317 6.24e-59 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6303g00007 - - qsa:O6P43_004596 530.791