Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6303g00006 ATGAAAAGACCTTCTACATCGATAGCATTTGCCACATTCCTTTTCCTCCTAAACACGACCAGTTGTGTAGAGTACGAGGTCAAGAGAACACTGATACAATTTCTGGGACAAGTCTCTGGAAAAGATGGCCAACAGAACTCCAGTTTGGTATGGAAACAAGACTCTGATCCCTGCAAGGGCACCTGGCAAGGTGTACACTGCGATGCTCAAAACATGTCCATAAAGAAGTTGCTACTTGATAACCTCAATTTCTCTGGAACACTTGATCTTGCTATGCTTTGCAACTTGCAGCCCCTGGCTGCATCTCTCACATATCTTAGCCTTGATGGCAACAAAATCAGTGGAGGGATGGCCTCTGAGGTTGGAAATTGCAAACAACTCACTCGCCTGCACCTAAGCGGAAACCAACTTGCTGGAGACCTTCCTAGTTCACTTGCTATGCTGAGCAGTCTGAAGAGATTGGACATTTCAAATAACCAGTTTTCAGGATCTTTACCAGACTTGTATAGAATCTCAGGGCTGAACATGTTCCTCGCACAGAACAATTACCTTGGAGGAACTATACCTGCTTTTGAGTTCTCTAATTTTGACCAATTCAATGTCTCCTTCAACAATTTCCGTGGCCATATTCCAAACGTGCATGGCTATTTCTCTGCCGACAGCTTTCTTGGTAATCCTGAACTATGTGGAGATCCACTGCCAAAGAATTGCTCTGATAAGCCTATGCCTTTGAGTGAGGCTCAGACATCAGAAAAATCAAAGGGTGCTTCCAAGGAGCAGATTCTTATGTACTCAGGGTATGCTGCATTGGGTGTCATCATTGTCCTTTTCGTAGTCTTAAAGCTGTGTAGAAGAAAGAAGGGAGAGAATAAAGTTGAAGCATTGAATAATAGGGTAGGGGCCAGTGGAGGTGGTGTTGTTGAAAAGCCGAGAAATGTTTCAAGTGAATACAAAAATGAGGTAAGCAGATCTGAGTTTTCAGTCCCTTCTGAAAGTGGGATGGTTTCACAATCACTGGTGGTTCTTTCGAGCCAAGCGGCAATGGAACTGAGATTGGAGGACTTGTTGGGAGCACCTGCAGAACTTATTGGAAGAGGAAAAAATGGAAGTCTTTATAAGGTGATGCTTGACAATGGGATGATGGTAGTTGTGAAAAGGATCAAGGATTGGACTATTTCAAGCCACGATTTCAAACAAAGAATGCGAATACTTAGCCAAGCAAAGCACCCTCGTGTCCTTTCACCACTTGCTTTCTATTCTTCTAAACAAGACAAGCTTTTGGTGTATGAATATCACCAGAATGGCAGTTTATTCAAGCTCCTACATGGTACTACAAAAGCCTTAGACTGGACCAGCAGACTTGGGATTGCAGCAACAATTGCTGAGGCATTAGCTTTCCTGCACCAAGAGATAGGCCATCATGGTATTGCTCATGGAAATCTGAAATCCTCCAACATTTTGCTAAACAAGAATATGGAACCATGCATAAGTGAATGTGGCATTATGGATATGGATGATCAAAGAGGTTCAGCTTTTGGCAGTAGTAGTACTGATGGTGGTGCATCAGATATGTTAAAGGGAGATGTTTATGGGTTTGGTGTGATTGTTCTTGAACTGCTTACTGGTAAGTTAGTGAAGGGAAATGGGATTGACTTAACCGATTGGGTTCAGTCAGTGGTGAGGGAAGAATGGACAGGTGAAGTCTTTGACAAGTCTCTGTTATCAGAGTATGCAAGCGAAGAGAGAATGGTGAATTTGCTTCAAGTGGCTATAAGATGTGTCAATCCTTCACCACAGGTAAGGCCAACCATGAACCAAGTTGCTCTCATGATTAACACTATCAAAGAGGAAGACGAAAAATCATTGATCTATGAAGTCTGA 1881 0.428 MKRPSTSIAFATFLFLLNTTSCVEYEVKRTLIQFLGQVSGKDGQQNSSLVWKQDSDPCKGTWQGVHCDAQNMSIKKLLLDNLNFSGTLDLAMLCNLQPLAASLTYLSLDGNKISGGMASEVGNCKQLTRLHLSGNQLAGDLPSSLAMLSSLKRLDISNNQFSGSLPDLYRISGLNMFLAQNNYLGGTIPAFEFSNFDQFNVSFNNFRGHIPNVHGYFSADSFLGNPELCGDPLPKNCSDKPMPLSEAQTSEKSKGASKEQILMYSGYAALGVIIVLFVVLKLCRRKKGENKVEALNNRVGASGGGVVEKPRNVSSEYKNEVSRSEFSVPSESGMVSQSLVVLSSQAAMELRLEDLLGAPAELIGRGKNGSLYKVMLDNGMMVVVKRIKDWTISSHDFKQRMRILSQAKHPRVLSPLAFYSSKQDKLLVYEYHQNGSLFKLLHGTTKALDWTSRLGIAATIAEALAFLHQEIGHHGIAHGNLKSSNILLNKNMEPCISECGIMDMDDQRGSAFGSSSTDGGASDMLKGDVYGFGVIVLELLTGKLVKGNGIDLTDWVQSVVREEWTGEVFDKSLLSEYASEERMVNLLQVAIRCVNPSPQVRPTMNQVALMINTIKEEDEKSLIYEV 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6303g00006 626 Pfam Protein kinase domain 361 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6303g00006 626 Gene3D Ribonuclease Inhibitor 22 237 IPR032675 -
Vium6303g00006 626 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vium6303g00006 626 SUPERFAMILY Protein kinase-like (PK-like) 361 610 IPR011009 -
Vium6303g00006 626 SUPERFAMILY L domain-like 50 215 - -
Vium6303g00006 626 ProSiteProfiles Protein kinase domain profile. 357 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6303g00006 626 Gene3D Phosphorylase Kinase; domain 1 330 431 - -
Vium6303g00006 626 Gene3D Transferase(Phosphotransferase) domain 1 433 625 - -
Vium6303g00006 626 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 95 187 - -
Vium6303g00006 626 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Vium6303g00006 626 Pfam Leucine Rich repeats (2 copies) 125 168 IPR025875 -
Vium6303g00006 626 PANTHER OS05G0588300 PROTEIN 7 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6303g00006 Vium-Chr6303 25796 28346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6303g00006 3 621 Receptor kinase-like Gene Family AT5G58300 32.127 1.14e-89 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium6303g00006 Pkinase 2.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6303g00006 - - gmx:100813796 976.467