Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6303g00005 ATGGGAGTCCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGCGTCTCCGTGGAAACCCTCGCCGGGAAAACCCTCGCCGTTGATGCGAGCATATGGATGGTGCAGTTTATGAAAGCGATGCGCGACGAGAAGGGGGAAATGGTTCGCAACGCCCATTTGCTGGGATTTTTCCGACGCATTTGCAAGCTTCTATTCCTCCGCACTAAGCCGGTCTTCGTCTTCGACGGCGGGACCCCCGCCCTCAAGCGCCGCACCGTCATTGCCCGCCGCCGGCAGCGCGAAAACGCTCAAGCTAAAGTCCGCAAAACTGCGGAGAAAATGCTGCTCAATCATTTAAAGACACTAAGATTGAAGGAACTGGCTGATGATATTAAGAGCCAGAGGATGCAGAAGAATAGTAATACTAAGGGTCAGAATGGATCTAAAGAAAAGGACTTTGTTGGTAGTGATTCAAGAGGAAGTCACGTGAAAGAGCTAGATGAAATGTCTGCAGCTAAATTTGCAACTAAGGAGGACATAAATTCTTCACAGGCAACATTATCCTCAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAGTGGAAAACATGCTAGAAAAGGAGTGCCGTCTATTATAATTAATCCTTCAGAGGAAGAACATGGCGCAGAAGAACAGATTCTACTGCCATCAGTAAATGCAGAAGTTGATATAGCTGTATTGGCTGCTTTGCCACAGTCTATGCAACTCGATATTCTTGCACAGGGCAAGGGCAAAGGGATTCTGCTCAGTGAAGCTGGCATGGTTGGTTGTAGCTCCAGACATGACACTGTTGCACCAAGGACTGACAATCAAGACTCAATTGACGAAATGTTGGCTGCATCTATTGCTCTGGAGGAAAATGAAAAGTTAGTAAATAATGCATCAACTTCTGTTGGGGCTTCCACTATTGAGGAAGATGAAGTTGACTATGACGAAGATGAAGAGATGATACTGCCAGCTATGCATGGTGAAGTTGATCCACTTGTTCTAGCCTCATTACCTCCATCAATGCAGCTGGACCTTCTTGTTCAGATGAGAGAGCGTTTAATTGCAGAGAACAGACAGAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAAATGAAGTGCAGAAAGCTGCAGCTGGAGGAGGAGTAGAGGGTGTACAGACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATATTTTCATCATCTTTTACTGGTGATAAACATGAACTTACCTCCACCGGCTTAGAGAAAAATAAAAGTACAAAAGAGAAGGCACAAGGAACACATTATTCTCAGAATCTTGCAAATAGCATTTTGGCTGGAAATGATTTTAATAAATCAAGTGAATTGATTTCCAATGAACCTGGTGAGCCTGCTGATGAAAATATTCAGACATATATTGATGACAGAGGTCAATTTCGTGTAAGTAGATTGAGAGCAATGGGGATGCGTATGACCCGGGATATACAAAGAAATTTGGATTTGATGAAGGAGTTCGAGCAGGAAAGTGCACAGGTGAACAAGGCTTCAAATATTGGAACAATTAAAAATGGAGAAACTAAGGGTTCATCAGAAAGTTCTGGGATCCAGCCTGTTGGTAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAGAATGTGCAAAATGAACAAATTATGCTAGACCAGAATGCTTCTATCGATATATCTTTTGAATATGGTTGCGAAAATGAGTTTGCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCATTGGCGATATTTGACACTGATGATTCTGCAGCAACAGTGCAACCTTCTCATTCTGATTGGGAAGAAGGAATAGTTGAAGGTAAGAGTACTGTTTTTCCCAAACAGGATAAGGTGGAATTGAAGTCTTCTGTTGCAGATGACGATAATAATAATGAAAGTGAAGTGGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCAGCTTACTGTCAGGAAAATATGCATCCCGAGGGCAGTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTGCAGGGGATGGAAAACACAAATGTATGTCATTGCTTGATGCGCAATCAAATACTTATGAGAACAAATTGGATCACGATTTTGAACATGGTGATCATTCTGAACATGGTGATCATTCTGACCCAATGGCTTTAAATGAGAACACTAGGTTCCTGAATAATAAAAATAAAATGGTGGGAATCACTTTGTGTAGGGAAGATGGTACTGAAAAAAAGGAATTACTTGAAACTGAAGATAGAGATAAAACGCCTGATTTTGTTTCCGTTAATAATGCACAAACTTTCCATTTTCATGGAAGTCCTTCAAAGCCAGCTTTGACTTTTATTTCAGATAAAACTGAGACATTGATTGACACAACTTGCAGATGGGACAGTCACCCTTGTTCTGAAGATTCAATTTCAGATACAAATATAATGACGAAGGACCAGGTCCCTGTGGTTGAAAAGAAGTTATCTGATGAACATGATAATGATAAAGTGTCTTCCTATCATAAGTATACACCCAAGGCTGTTCCAGTTGGCGCAACTGAAGAGGAGAAAAAGAACTATATTAAGGAACCTGAACCATTTAGTAATTGTACTGACACTACCAAACCCACTATTCATTTGGGGGAGTCATCCTTGAAAGGAGTAACAGAAGAGCTTATTGAGCCAAACTTGGCTTCAGAGGGTAATAATGGAATTTTTTTTGACAAAAGGAACAGTAGCCATGGCAGTGATACGGTTAACAGCCCAGGGGATTTTCCTGCTCTAGCAACTCAGGTTAGCCTGGAGAAAGAAATTCACATTCTTGGTCAAGAATATATTAACCTAGAGAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAGTCAGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTAACTGATGACTCTGATGTCCTTCTATTTGGGGCACGCAGTGTCTACAAAAATATATTTGATGACCGAAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGACTGACTAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACCGAAGGTGTAAGTGGGATTGGCATCGTTAATGCTATTGAGGTTTTGAATGCATTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGAAATGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAAAGTGGATCAAATTCCAGAAAGAAAGGATCAAAAGTTGAAGAAAAGATAAATTCCTTAAATTGTGATGCTAAAGAGTCTCCATCAGAGCAGAACCTCCCCCATGCGCTGGAGCAAAATAAGTTGCCAGATTACATTCAAGAAACAAAGCAAACTTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCACATCCCTTCTTCTTTTCCAAGTGAAACAGTTATTTCTGCTTATTGTTCTCCACATGTTGATAAATCAACCGAGCCTTTCACATGGGGGAAGCCAGATCACCTTGTTCTTCGGAAATTGTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAAGCAGACGAATTGCTATTACCTGTGTTAAAGGAGTATAATAAACGTGAGACTCAATTGCGGTTGGAAGCATTTTACAGTTTTAATGAGAGATTTGCGAAAATCCGTAGCAAAAGAATTAAGAAGGCAGTAAAAGGAATAACTGGTAAGCTGCCTTCAGATATGATAGATGATTCTGCAGAGGTGTTGTCCAAGAGTAGGAAGATTGGGAGAGAACCCGAGGATAGCACATTAGAGATTTCAGGGGGAACAGACAAACGTCTTGAACGTCAAAGCAAATCAAAAATAAAACAGTCAACGAAAAGGAAGAATGATACTGTTGCCAAGGAACAGTCAAAGAAAAAGAAAGACAACGATGATCCGTCTTCAGCACCTGGTACATCAGAGATGGAGAATTTACAGCCAAGTATGCAGACAGAAGAACAGTGTGATGGTAAGGCATTAATTCAGAATACAAGTGGCCGAGGAAGACATAGAGGTATGGGAATAAAAAGAGGAAGGGACAATGAGAATCTCAGTTCATCTGCTAGCAGTGACATTGATGATCAGGGATCAAGAGTGCATGTGGATAAGTTTTCAGAACACGTGAGAAAGTCATTGCGATCTCGGAAACCTGTCAACTATTCTTTCGAAGATCCTGAAGATGAAGATGCCGAAGATGCCGATGATGCCTTTGATCATAGTAATCGGACTGGTCCAATTGAAGAAAAATTATCTCAGATTCATGGTGCATCTGAAGATGGTCCAACAGATTTCAGTGCAATGAATTTTCCTTTAAGGGAGAACTCACCAACCGACCCTTTCAAGTCAGAAGGTCCGTTTTGCGTGCATGCAGGTGAAATTAATCATCCTAGTACTGGCAATCATGATTCTTCTACTGGAAATCATGACTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATGGTGAGACAGACAAGCTGGACACAATTGACGATGTCAATACTGCCACAGTGGATTCTACTCAAGACTTTTCACACTTTTCTGATTGTTTGGATGAAACTAACCGTGATAAAAACAGTTCAGATATATTATTTTCTGGCACTGAAAAGCCTGAAAATGGGTCAGAAGGTGGAGGAGACTTTTATGACTTTGGTATAAAGCGAAATGACCTTGTAAATACTAGTAGTTATGATCATTCTGACGTAGGGATCTTGAAACCAGAGAATGTTCATAACAATAGTGGAGCCTCCGCTGGAGTTTTCAGTGCTATGCCTTTTTTGAGGAAAAGAAGGAAAAAGTGA 5052 0.4123 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKMLLNHLKTLRLKELADDIKSQRMQKNSNTKGQNGSKEKDFVGSDSRGSHVKELDEMSAAKFATKEDINSSQATLSSSYNQEELDEMLAASIAAEESGKHARKGVPSIIINPSEEEHGAEEQILLPSVNAEVDIAVLAALPQSMQLDILAQGKGKGILLSEAGMVGCSSRHDTVAPRTDNQDSIDEMLAASIALEENEKLVNNASTSVGASTIEEDEVDYDEDEEMILPAMHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTGLEKNKSTKEKAQGTHYSQNLANSILAGNDFNKSSELISNEPGEPADENIQTYIDDRGQFRVSRLRAMGMRMTRDIQRNLDLMKEFEQESAQVNKASNIGTIKNGETKGSSESSGIQPVGKSQEVNVDLVGENVQNEQIMLDQNASIDISFEYGCENEFANGEDDIFSSLVGGNPLAIFDTDDSAATVQPSHSDWEEGIVEGKSTVFPKQDKVELKSSVADDDNNNESEVEWEEGDCDGANSSLLSGKYASRGQLEEESNLQEAIRRSLESAGDGKHKCMSLLDAQSNTYENKLDHDFEHGDHSEHGDHSDPMALNENTRFLNNKNKMVGITLCREDGTEKKELLETEDRDKTPDFVSVNNAQTFHFHGSPSKPALTFISDKTETLIDTTCRWDSHPCSEDSISDTNIMTKDQVPVVEKKLSDEHDNDKVSSYHKYTPKAVPVGATEEEKKNYIKEPEPFSNCTDTTKPTIHLGESSLKGVTEELIEPNLASEGNNGIFFDKRNSSHGSDTVNSPGDFPALATQVSLEKEIHILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFRKWVESPDPTILGRLDAKSGSNSRKKGSKVEEKINSLNCDAKESPSEQNLPHALEQNKLPDYIQETKQTFFNKHRNVSKNWHIPSSFPSETVISAYCSPHVDKSTEPFTWGKPDHLVLRKLCWEKFGWIGQKADELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKLPSDMIDDSAEVLSKSRKIGREPEDSTLEISGGTDKRLERQSKSKIKQSTKRKNDTVAKEQSKKKKDNDDPSSAPGTSEMENLQPSMQTEEQCDGKALIQNTSGRGRHRGMGIKRGRDNENLSSSASSDIDDQGSRVHVDKFSEHVRKSLRSRKPVNYSFEDPEDEDAEDADDAFDHSNRTGPIEEKLSQIHGASEDGPTDFSAMNFPLRENSPTDPFKSEGPFCVHAGEINHPSTGNHDSSTGNHDSSDDYLKMGGGFCLDDGETDKLDTIDDVNTATVDSTQDFSHFSDCLDETNRDKNSSDILFSGTEKPENGSEGGGDFYDFGIKRNDLVNTSSYDHSDVGILKPENVHNNSGASAGVFSAMPFLRKRRKK 1683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6303g00005 1683 FunFam DNA repair protein UVH3 1083 1140 - -
Vium6303g00005 1683 SMART xpgn3 1 98 IPR006085 GO:0004518
Vium6303g00005 1683 Pfam XPG I-region 1017 1098 IPR006086 GO:0004518
Vium6303g00005 1683 Gene3D - 968 1082 - -
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 547 566 - -
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 1441 1469 - -
Vium6303g00005 1683 Gene3D - 1083 1145 - -
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 1322 1380 - -
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 740 759 - -
Vium6303g00005 1683 CDD H3TH_XPG 1086 1230 - -
Vium6303g00005 1683 CDD PIN_XPG_RAD2 2 92 - -
Vium6303g00005 1683 FunFam DNA repair protein UVH3 1 147 - -
Vium6303g00005 1683 FunFam DNA repair protein UVH3 964 1082 - -
Vium6303g00005 1683 SMART HhH_4 1085 1118 IPR008918 GO:0003677|GO:0003824
Vium6303g00005 1683 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1083 1292 IPR036279 -
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 1426 1440 - -
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 1322 1559 - -
Vium6303g00005 1683 Coils Coil 970 1004 - -
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 1608 1631 - -
Vium6303g00005 1683 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Vium6303g00005 1683 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 259 - -
Vium6303g00005 1683 ProSitePatterns XPG protein signature 2. 1017 1031 IPR019974 GO:0016788
Vium6303g00005 1683 SUPERFAMILY PIN domain-like 2 1098 IPR029060 -
Vium6303g00005 1683 CDD PIN_XPG_RAD2 1000 1084 - -
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 740 762 - -
Vium6303g00005 1683 Gene3D - 1 142 - -
Vium6303g00005 1683 SMART xpgineu 1014 1083 IPR006086 GO:0004518
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 660 685 - -
Vium6303g00005 1683 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00005 1683 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00005 1683 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00005 1683 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vium6303g00005 1683 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 1381 1407 - -
Vium6303g00005 1683 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 129 144 - -
Vium6303g00005 1683 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6303g00005 Vium-Chr6303 7092 18963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6303g00005 1008 1115 Core DNA Replication Machinery Family AT5G26680 36.937 7.88e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6303g00005 K10846 - gmx:100820295 2496.85