Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6303g00004 ATGGGAGTCCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGCGTCTCCGTGGAAACCCTCGCCGGGAAAACCCTCGCCGTTGATGCGAGCATATGGATGGTGCAGTTTATGAAAGCGATGCGCGACGAGAAGGGGGAAATGGTTCGCAACGCCCATTTGCTGGGATTTTTCCGACGCATTTGCAAGCTTCTATTCCTCCGCACTAAGCCGGTCTTCGTCTTCGACGGCGGGACCCCCGCCCTCAAGCGCCGCACCGTCATTGCCCGCCGCCGGCAGCGCGAAAACGCTCAAGCTAAAGTCCGCAAAACTGCGGAGAAAATGCTGCTCAATCATTTAAAGACACTAAGATTGAAGGAACTGGCTGATGATATTAAGAGCCAGAGGATGCAGAAGAATAGTAATACTAAGGGTCAGAATGGATCTAAAGAAAAGGACTTTGTTGGTAGTGATTCAAGAGGAAGTCACGTGAAAGAGCTAGATGAAATGTCTGCAGCTAAATTTGCAACTAAGGAGGACATAAATTCTTCACAGGCAACATTATCCTCAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAGTGGAAAACATGCTAGAAAAGGAGTGCCGTCTATTATAATTAATCCTTCAGAGGAAGAACATGGCGCAGAAGAACAGATTCTACTGCCATCAGTAAATGCAGAAGTTGATATAGCTGTATTGGCTGCTTTGCCACAGTCTATGCAACTCGATATTCTTGCACAGCTAAAAGGAAAGAAAAAGGAAGTGTTACTAAAGGAAGTTTACAATCACGAACAACATGATGTCGATTATCAGGGCAAGGGCAAAGGGATTCTGCTCAGTGAAGCTGGCATGGTTGGTTGTAGCTCCAGACATGACACTGTTGCACCAAGGACTGACAATCAAGACTCAATTGACGAAATGTTGGCTGCATCTATTGCTCTGGAGGAAAATGAAAAGTTAGTAAATAATGCATCAACTTCTGTTGGGGCTTCCACTATTGAGGAAGATGAAGTTGACTATGACGAAGATGAAGAGATGATACTGCCAGCTATGCATGGTGAAGTTGATCCACTTGTTCTAGCCTCATTACCTCCATCAATGCAGCTGGACCTTCTTGTTCAGATGAGAGAGCGTTTAATTGCAGAGAACAGACAGAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAAATGAAGTGCAGAAAGCTGCAGCTGGAGGAGGAGTAGAGGGTGTACAGACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATATTTTCATCATCTTTTACTGGTGATAAACATGAACTTACCTCCACCGGCTTAGAGAAAAATAAAAGTACAAAAGAGAAGGCACAAGGAACACATTATTCTCAGAATCTTGCAAATAGCATTTTGGCTGGAAATGATTTTAATAAATCAAGTGAATTGATTTCCAATGAACCTGGTGAGCCTGCTGATGAAAATATTCAGACATATATTGATGACAGAGGTCAATTTCGTGTAAGTAGATTGAGAGCAATGGGGATGCGTATGACCCGGGATATACAAAGAAATTTGGATTTGATGAAGGAGTTCGAGCAGGAAAGTGCACAGGTGAACAAGGCTTCAAATATTGGAACAATTAAAAATGGAGAAACTAAGGGTTCATCAGAAAGTTCTGGGATCCAGCCTGTTGGTAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAGAATGTGCAAAATGAACAAATTATGCTAGACCAGAATGCTTCTATCGATATATCTTTTGAATATGGTTGCGAAAATGAGTTTGCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCATTGGCGATATTTGACACTGATGATTCTGCAGCAACAGTGCAACCTTCTCATTCTGATTGGGAAGAAGGAATAGTTGAAGGTAAGAGTACTGTTTTTCCCAAACAGGATAAGGTGGAATTGAAGTCTTCTGTTGCAGATGACGATAATAATAATGAAAGTGAAGTGGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCAGCTTACTGTCAGGAAAATATGCATCCCGAGGGCAGTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTGCAGGGGATGGAAAACACAAATGTATGTCATTGCTTGATGCGCAATCAAATACTTATGAGAACAAATTGGATCACGATTTTGAACATGGTGATCATTCTGAACATGGTGATCATTCTGACCCAATGGCTTTAAATGAGAACACTAGGTTCCTGAATAATAAAAATAAAATGGTGGGAATCACTTTGTGTAGGGAAGATGGTACTGAAAAAAAGGAATTACTTGAAACTGAAGATAGAGATAAAACGCCTGATTTTGTTTCCGTTAATAATGCACAAACTTTCCATTTTCATGGAAGTCCTTCAAAGCCAGCTTTGACTTTTATTTCAGATAAAACTGAGACATTGATTGACACAACTTGCAGATGGGACAGTCACCCTTGTTCTGAAGATTCAATTTCAGATACAAATATAATGACGAAGGACCAGGTCCCTGTGGTTGAAAAGAAGTTATCTGATGAACATGATAATGATAAAGTGTCTTCCTATCATAAGTATACACCCAAGGCTGTTCCAGTTGGCGCAACTGAAGAGGAGAAAAAGAACTATATTAAGGAACCTGAACCATTTAGTAATTGTACTGACACTACCAAACCCACTATTCATTTGGGGGAGTCATCCTTGAAAGGAGTAACAGAAGAGCTTATTGAGCCAAACTTGGCTTCAGAGGGTAATAATGGAATTTTTTTTGACAAAAGGAACAGTAGCCATGGCAGTGATACGGTTAACAGCCCAGGGGATTTTCCTGCTCTAGCAACTCAGGTTAGCCTGGAGAAAGAAATTCACATTCTTGGTCAAGAATATATTAACCTAGAGAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAGTCAGTAAACAGTGAATTATTCACTGAATGTCAGGACATTGAAAAGGAGCTTGGACTGACTAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACCGAAGGTGTAAGTGGGATTGGCATCGTTAATGCTATTGAGGTTTTGAATGCATTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGAAATGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAAAGTGGATCAAATTCCAGAAAGAAAGGATCAAAAGTTGAAGAAAAGATAAATTCCTTAAATTGTGATGCTAAAGAGTCTCCATCAGAGCAGAACCTCCCCCATGCGCTGGAGCAAAATAAGTTGCCAGATTACATTCAAGAAACAAAGCAAACTTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCACATCCCTTCTTCTTTTCCAAGTGAAACAGTTATTTCTGCTTATTGTTCTCCACATGTTGATAAATCAACCGAGCCTTTCACATGGGGGAAGCCAGATCACCTTGTTCTTCGGAAATTGTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAAGCAGACGAATTGCTATTACCTGTGTTAAAGGAGTATAATAAACGTGAGACTCAATTGCGGTTGGAAGCATTTTACAGTTTTAATGAGAGATTTGCGAAAATCCGTAGCAAAAGAATTAAGAAGGCAGTAAAAGGAATAACTGGTAAGCTGCCTTCAGATATGATAGATGATTCTGCAGAGGTGTTGTCCAAGAGTAGGAAGATTGGGAGAGAACCCGAGGATAGCACATTAGAGATTTCAGGGGGAACAGACAAACGTCTTGAACGTCAAAGCAAATCAAAAATAAAACAGTCAACGAAAAGGAAGAATGATACTGTTGCCAAGGAACAGTCAAAGAAAAAGAAAGACAACGATGATCCGTCTTCAGCACCTGGTACATCAGAGATGGAGAATTTACAGCCAAGTATGCAGACAGAAGAACAGTGTGATGGTAAGGCATTAATTCAGAATACAAGTGGCCGAGGAAGACATAGAGGTATGGGAATAAAAAGAGGAAGGGACAATGAGAATCTCAGTTCATCTGCTAGCAGTGACATTGATGATCAGGGATCAAGAGTGCATGTGGATAAGTTTTCAGAACACGTGAGAAAGTCATTGCGATCTCGGAAACCTGTCAACTATTCTTTCGAAGATCCTGAAGATGAAGATGCCGAAGATGCCGATGATGCCTTTGATCATAGTAATCGGACTGGTCCAATTGAAGAAAAATTATCTCAGATTCATGGTGCATCTGAAGATGGTCCAACAGATTTCAGTGCAATGAATTTTCCTTTAAGGGAGAACTCACCAACCGACCCTTTCAAGTCAGAAGGTCCGTTTTGCGTGCATGCAGGTGAAATTAATCATCCTAGTACTGGCAATCATGATTCTTCTACTGGAAATCATGACTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATGGTGAGACAGACAAGCTGGACACAATTGACGATGTCAATACTGCCACAGTGGATTCTACTCAAGACTTTTCACACTTTTCTGATTGTTTGGATGAAACTAACCGTGATAAAAACAGTTCAGATATATTATTTTCTGGCACTGAAAAGCCTGAAAATGGGTCAGAAGGTGGAGGAGACTTTTATGACTTTGGTATAAAGCGAAATGACCTTGTAAATACTAGTAGTTATGATCATTCTGACGTAGGGATCTTGAAACCAGAGAATGTTCATAACAATAGTGGAGCCTCCGCTGGAGTTTTCAGTGCTATGCCTTTTTTGAGGAAAAGAAGGAAAAAGTGA 4929 0.4123 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKMLLNHLKTLRLKELADDIKSQRMQKNSNTKGQNGSKEKDFVGSDSRGSHVKELDEMSAAKFATKEDINSSQATLSSSYNQEELDEMLAASIAAEESGKHARKGVPSIIINPSEEEHGAEEQILLPSVNAEVDIAVLAALPQSMQLDILAQLKGKKKEVLLKEVYNHEQHDVDYQGKGKGILLSEAGMVGCSSRHDTVAPRTDNQDSIDEMLAASIALEENEKLVNNASTSVGASTIEEDEVDYDEDEEMILPAMHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTGLEKNKSTKEKAQGTHYSQNLANSILAGNDFNKSSELISNEPGEPADENIQTYIDDRGQFRVSRLRAMGMRMTRDIQRNLDLMKEFEQESAQVNKASNIGTIKNGETKGSSESSGIQPVGKSQEVNVDLVGENVQNEQIMLDQNASIDISFEYGCENEFANGEDDIFSSLVGGNPLAIFDTDDSAATVQPSHSDWEEGIVEGKSTVFPKQDKVELKSSVADDDNNNESEVEWEEGDCDGANSSLLSGKYASRGQLEEESNLQEAIRRSLESAGDGKHKCMSLLDAQSNTYENKLDHDFEHGDHSEHGDHSDPMALNENTRFLNNKNKMVGITLCREDGTEKKELLETEDRDKTPDFVSVNNAQTFHFHGSPSKPALTFISDKTETLIDTTCRWDSHPCSEDSISDTNIMTKDQVPVVEKKLSDEHDNDKVSSYHKYTPKAVPVGATEEEKKNYIKEPEPFSNCTDTTKPTIHLGESSLKGVTEELIEPNLASEGNNGIFFDKRNSSHGSDTVNSPGDFPALATQVSLEKEIHILGQEYINLENEQRKLERNAESVNSELFTECQDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFRKWVESPDPTILGRLDAKSGSNSRKKGSKVEEKINSLNCDAKESPSEQNLPHALEQNKLPDYIQETKQTFFNKHRNVSKNWHIPSSFPSETVISAYCSPHVDKSTEPFTWGKPDHLVLRKLCWEKFGWIGQKADELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKLPSDMIDDSAEVLSKSRKIGREPEDSTLEISGGTDKRLERQSKSKIKQSTKRKNDTVAKEQSKKKKDNDDPSSAPGTSEMENLQPSMQTEEQCDGKALIQNTSGRGRHRGMGIKRGRDNENLSSSASSDIDDQGSRVHVDKFSEHVRKSLRSRKPVNYSFEDPEDEDAEDADDAFDHSNRTGPIEEKLSQIHGASEDGPTDFSAMNFPLRENSPTDPFKSEGPFCVHAGEINHPSTGNHDSSTGNHDSSDDYLKMGGGFCLDDGETDKLDTIDDVNTATVDSTQDFSHFSDCLDETNRDKNSSDILFSGTEKPENGSEGGGDFYDFGIKRNDLVNTSSYDHSDVGILKPENVHNNSGASAGVFSAMPFLRKRRKK 1642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6303g00004 1642 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1042 1251 IPR036279 -
Vium6303g00004 1642 CDD H3TH_XPG 1045 1189 - -
Vium6303g00004 1642 SMART xpgn3 1 98 IPR006085 GO:0004518
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 684 709 - -
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 571 590 - -
Vium6303g00004 1642 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 284 1035 - -
Vium6303g00004 1642 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Vium6303g00004 1642 Gene3D - 1042 1104 - -
Vium6303g00004 1642 FunFam DNA repair protein UVH3 1042 1099 - -
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 1281 1519 - -
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 764 783 - -
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 1340 1366 - -
Vium6303g00004 1642 CDD PIN_XPG_RAD2 2 92 - -
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 1400 1428 - -
Vium6303g00004 1642 Gene3D - 1 142 - -
Vium6303g00004 1642 Coils Coil 994 1028 - -
Vium6303g00004 1642 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Vium6303g00004 1642 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00004 1642 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00004 1642 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00004 1642 SMART HhH_4 1044 1077 IPR008918 GO:0003677|GO:0003824
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 764 786 - -
Vium6303g00004 1642 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Vium6303g00004 1642 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vium6303g00004 1642 SUPERFAMILY PIN domain-like 2 1057 IPR029060 -
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 1567 1590 - -
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 129 144 - -
Vium6303g00004 1642 FunFam DNA repair protein UVH3 1 147 - -
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 1385 1399 - -
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 125 157 - -
Vium6303g00004 1642 MobiDBLite consensus disorder prediction 1281 1339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6303g00004 Vium-Chr6303 7092 18963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6303g00004 1 100 Core DNA Replication Machinery Family AT5G26680 36.364 4.89e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6303g00004 K10846 - gmx:100820295 1526.53