Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6303g00003 ATGGGAGTCCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGCGTCTCCGTGGAAACCCTCGCCGGGAAAACCCTCGCCGTTGATGCGAGCATATGGATGGTGCAGTTTATGAAAGCGATGCGCGACGAGAAGGGGGAAATGGTTCGCAACGCCCATTTGCTGGGATTTTTCCGACGCATTTGCAAGCTTCTATTCCTCCGCACTAAGCCGGTCTTCGTCTTCGACGGCGGGACCCCCGCCCTCAAGCGCCGCACCGTCATTGCCCGCCGCCGGCAGCGCGAAAACGCTCAAGCTAAAGTCCGCAAAACTGCGGAGAAAATGCTGCTCAATCATTTAAAGACACTAAGATTGAAGGAACTGGCTGATGATATTAAGAGCCAGAGGATGCAGAAGAATAGTAATACTAAGGGTCAGAATGGATCTAAAGAAAAGGACTTTGTTGGTAGTGATTCAAGAGGAAGTCACGTGAAAGAGCTAGATGAAATGTCTGCAGCTAAATTTGCAACTAAGGAGGACATAAATTCTTCACAGGCAACATTATCCTCAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAGTGGAAAACATGCTAGAAAAGGAGTGCCGTCTATTATAATTAATCCTTCAGAGGAAGAACATGGCGCAGAAGAACAGATTCTACTGCCATCAGTAAATGCAGAAGTTGATATAGCTGTATTGGCTGCTTTGCCACAGTCTATGCAACTCGATATTCTTGCACAGCTAAAAGGAAAGAAAAAGGAAGTGTTACTAAAGGAAGTTTACAATCACGAACAACATGATGTCGATTATCAGGGCAAGGGCAAAGGGATTCTGCTCAGTGAAGCTGGCATGGTTGGTTGTAGCTCCAGACATGACACTGTTGCACCAAGGACTGACAATCAAGACTCAATTGACGAAATGTTGGCTGCATCTATTGCTCTGGAGGAAAATGAAAAGTTAGTAAATAATGCATCAACTTCTGTTGGGGCTTCCACTATTGAGGAAGATGAAGTTGACTATGACGAAGATGAAGAGATGATACTGCCAGCTATGCATGGTGAAGTTGATCCACTTGTTCTAGCCTCATTACCTCCATCAATGCAGCTGGACCTTCTTGTTCAGATGAGAGAGCGTTTAATTGCAGAGAACAGACAGAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAAATGAAGTGCAGAAAGCTGCAGCTGGAGGAGGAGTAGAGGGTGTACAGACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATATTTTCATCATCTTTTACTGGTGATAAACATGAACTTACCTCCACCGGCTTAGAGAAAAATAAAAGTACAAAAGAGAAGGCACAAGGAACACATTATTCTCAGAATCTTGCAAATAGCATTTTGGCTGGAAATGATTTTAATAAATCAAGTGAATTGATTTCCAATGAACCTGGTGAGCCTGCTGATGAAAATATTCAGACATATATTGATGACAGAGGTCAATTTCGTGTAAGTAGATTGAGAGCAATGGGGATGCGTATGACCCGGGATATACAAAGAAATTTGGATTTGATGAAGGAGTTCGAGCAGGAAAGTGCACAGGTGAACAAGGCTTCAAATATTGGAACAATTAAAAATGGAGAAACTAAGGGTTCATCAGAAAGTTCTGGGATCCAGCCTGTTGGTAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAGAATGTGCAAAATGAACAAATTATGCTAGACCAGAATGCTTCTATCGATATATCTTTTGAATATGGTTGCGAAAATGAGTTTGCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCATTGGCGATATTTGACACTGATGATTCTGCAGCAACAGTGCAACCTTCTCATTCTGATTGGGAAGAAGGAATAGTTGAAGGTAAGAGTACTGTTTTTCCCAAACAGGATAAGGTGGAATTGAAGTCTTCTGTTGCAGATGACGATAATAATAATGAAAGTGAAGTGGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCAGCTTACTGTCAGGAAAATATGCATCCCGAGGGCAGTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTGCAGGGGATGGAAAACACAAATGTATGTCATTGCTTGATGCGCAATCAAATACTTATGAGAACAAATTGGATCACGATTTTGAACATGGTGATCATTCTGAACATGGTGATCATTCTGACCCAATGGCTTTAAATGAGAACACTAGGTTCCTGAATAATAAAAATAAAATGGTGGGAATCACTTTGTGTAGGGAAGATGGTACTGAAAAAAAGGAATTACTTGAAACTGAAGATAGAGATAAAACGCCTGATTTTGTTTCCGTTAATAATGCACAAACTTTCCATTTTCATGGAAGTCCTTCAAAGCCAGCTTTGACTTTTATTTCAGATAAAACTGAGACATTGATTGACACAACTTGCAGATGGGACAGTCACCCTTGTTCTGAAGATTCAATTTCAGATACAAATATAATGACGAAGGACCAGGTCCCTGTGGTTGAAAAGAAGTTATCTGATGAACATGATAATGATAAAGTGTCTTCCTATCATAAGTATACACCCAAGGCTGTTCCAGTTGGCGCAACTGAAGAGGAGAAAAAGAACTATATTAAGGAACCTGAACCATTTAGTAATTGTACTGACACTACCAAACCCACTATTCATTTGGGGGAGTCATCCTTGAAAGGAGTAACAGAAGAGCTTATTGAGCCAAACTTGGCTTCAGAGGGTAATAATGGAATTTTTTTTGACAAAAGGAACAGTAGCCATGGCAGTGATACGGTTAACAGCCCAGGGGATTTTCCTGCTCTAGCAACTCAGGTTAGCCTGGAGAAAGAAATTCACATTCTTGGTCAAGAATATATTAACCTAGAGAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAGTCAGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTAACTGATGACTCTGATGTCCTTCTATTTGGGGCACGCAGTGTCTACAAAAATATATTTGATGACCGAAAATATGACATTGAAAAGGAGCTTGGACTGACTAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACCGAAGGTGTAAGTGGGATTGGCATCGTTAATGCTATTGAGGTTTTGAATGCATTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGAAATGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAAAGTGGATCAAATTCCAGAAAGAAAGGATCAAAAGTTGAAGAAAAGATAAATTCCTTAAATTGTGATGCTAAAGAGTCTCCATCAGAGCAGAACCTCCCCCATGCGCTGGAGCAAAATAAGTTGCCAGATTACATTCAAGAAACAAAGCAAACTTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCACATCCCTTCTTCTTTTCCAAGTGAAACAGTTATTTCTGCTTATTGTTCTCCACATGTTGATAAATCAACCGAGCCTTTCACATGGGGGAAGCCAGATCACCTTGTTCTTCGGAAATTGTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAAGCAGACGAATTGCTATTACCTGTGTTAAAGGAGTATAATAAACGTGAGACTCAATTGCGGTTGGAAGCATTTTACAGTTTTAATGAGAGATTTGCGAAAATCCGTAGCAAAAGAATTAAGAAGGCAGTAAAAGGAATAACTGGTAAGCTGCCTTCAGATATGATAGATGATTCTGCAGAGGTGTTGTCCAAGAGTAGGAAGATTGGGAGAGAACCCGAGGATAGCACATTAGAGATTTCAGGGGGAACAGACAAACGTCTTGAACGTCAAAGCAAATCAAAAATAAAACAGTCAACGAAAAGGAAGAATGATACTGTTGCCAAGGAACAGTCAAAGAAAAAGAAAGACAACGATGATCCGTCTTCAGCACCTGGTACATCAGAGATGGAGAATTTACAGCCAAGTATGCAGACAGAAGAACAGTGTGATGGTAAGGCATTAATTCAGAATACAAGTGGCCGAGGAAGACATAGAGGTATGGGAATAAAAAGAGGAAGGGACAATGAGAATCTCAGTTCATCTGCTAGCAGTGACATTGATGATCAGGGATCAAGAGTGCATGTGGATAAGTTTTCAGAACACGTGAGAAAGTCATTGCGATCTCGGAAACCTGTCAACTATTCTTTCGAAGATCCTGAAGATGAAGATGCCGAAGATGCCGATGATGCCTTTGATCATAGTAATCGGACTGGTCCAATTGAAGAAAAATTATCTCAGATTCATGGTGCATCTGAAGATGGTCCAACAGATTTCAGTGCAATGAATTTTCCTTTAAGGGAGAACTCACCAACCGACCCTTTCAAGTCAGAAGGTCCGTTTTGCGTGCATGCAGGTGAAATTAATCATCCTAGTACTGGCAATCATGATTCTTCTACTGGAAATCATGACTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATGGTGAGACAGACAAGCTGGACACAATTGACGATGTCAATACTGCCACAGTGGATTCTACTCAAGACTTTTCACACTTTTCTGATTGTTTGGATGAAACTAACCGTGATAAAAACAGTTCAGATATATTATTTTCTGGCACTGAAAAGCCTGAAAATGGGTCAGAAGGTGGAGGAGACTTTTATGACTTTGGTATAAAGCGAAATGACCTTGTAAATACTAGTAGTTATGATCATTCTGACGTAGGGATCTTGAAACCAGAGAATGTTCATAACAATAGTGGAGCCTCCGCTGGAGTTTTCAGTGCTATGCCTTTTTTGAGGAAAAGAAGGAAAAAGTGA 5103 0.4111 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKMLLNHLKTLRLKELADDIKSQRMQKNSNTKGQNGSKEKDFVGSDSRGSHVKELDEMSAAKFATKEDINSSQATLSSSYNQEELDEMLAASIAAEESGKHARKGVPSIIINPSEEEHGAEEQILLPSVNAEVDIAVLAALPQSMQLDILAQLKGKKKEVLLKEVYNHEQHDVDYQGKGKGILLSEAGMVGCSSRHDTVAPRTDNQDSIDEMLAASIALEENEKLVNNASTSVGASTIEEDEVDYDEDEEMILPAMHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTGLEKNKSTKEKAQGTHYSQNLANSILAGNDFNKSSELISNEPGEPADENIQTYIDDRGQFRVSRLRAMGMRMTRDIQRNLDLMKEFEQESAQVNKASNIGTIKNGETKGSSESSGIQPVGKSQEVNVDLVGENVQNEQIMLDQNASIDISFEYGCENEFANGEDDIFSSLVGGNPLAIFDTDDSAATVQPSHSDWEEGIVEGKSTVFPKQDKVELKSSVADDDNNNESEVEWEEGDCDGANSSLLSGKYASRGQLEEESNLQEAIRRSLESAGDGKHKCMSLLDAQSNTYENKLDHDFEHGDHSEHGDHSDPMALNENTRFLNNKNKMVGITLCREDGTEKKELLETEDRDKTPDFVSVNNAQTFHFHGSPSKPALTFISDKTETLIDTTCRWDSHPCSEDSISDTNIMTKDQVPVVEKKLSDEHDNDKVSSYHKYTPKAVPVGATEEEKKNYIKEPEPFSNCTDTTKPTIHLGESSLKGVTEELIEPNLASEGNNGIFFDKRNSSHGSDTVNSPGDFPALATQVSLEKEIHILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFRKWVESPDPTILGRLDAKSGSNSRKKGSKVEEKINSLNCDAKESPSEQNLPHALEQNKLPDYIQETKQTFFNKHRNVSKNWHIPSSFPSETVISAYCSPHVDKSTEPFTWGKPDHLVLRKLCWEKFGWIGQKADELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKLPSDMIDDSAEVLSKSRKIGREPEDSTLEISGGTDKRLERQSKSKIKQSTKRKNDTVAKEQSKKKKDNDDPSSAPGTSEMENLQPSMQTEEQCDGKALIQNTSGRGRHRGMGIKRGRDNENLSSSASSDIDDQGSRVHVDKFSEHVRKSLRSRKPVNYSFEDPEDEDAEDADDAFDHSNRTGPIEEKLSQIHGASEDGPTDFSAMNFPLRENSPTDPFKSEGPFCVHAGEINHPSTGNHDSSTGNHDSSDDYLKMGGGFCLDDGETDKLDTIDDVNTATVDSTQDFSHFSDCLDETNRDKNSSDILFSGTEKPENGSEGGGDFYDFGIKRNDLVNTSSYDHSDVGILKPENVHNNSGASAGVFSAMPFLRKRRKK 1700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6303g00003 1700 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 1625 1648 - -
Vium6303g00003 1700 SMART xpgn3 1 98 IPR006085 GO:0004518
Vium6303g00003 1700 SUPERFAMILY PIN domain-like 2 1115 IPR029060 -
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 684 709 - -
Vium6303g00003 1700 CDD H3TH_XPG 1103 1247 - -
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 571 590 - -
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 1339 1577 - -
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 1443 1457 - -
Vium6303g00003 1700 SMART HhH_4 1102 1135 IPR008918 GO:0003677|GO:0003824
Vium6303g00003 1700 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 260 - -
Vium6303g00003 1700 CDD PIN_XPG_RAD2 1024 1101 - -
Vium6303g00003 1700 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1100 1309 IPR036279 -
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 764 783 - -
Vium6303g00003 1700 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Vium6303g00003 1700 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vium6303g00003 1700 CDD PIN_XPG_RAD2 2 92 - -
Vium6303g00003 1700 FunFam DNA repair protein UVH3 1 147 - -
Vium6303g00003 1700 Gene3D - 1105 1162 - -
Vium6303g00003 1700 Pfam XPG I-region 1041 1115 IPR006086 GO:0004518
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 1339 1397 - -
Vium6303g00003 1700 Coils Coil 994 1028 - -
Vium6303g00003 1700 ProSitePatterns XPG protein signature 2. 1041 1055 IPR019974 GO:0016788
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 1398 1424 - -
Vium6303g00003 1700 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Vium6303g00003 1700 Gene3D - 981 1104 - -
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 1458 1486 - -
Vium6303g00003 1700 FunFam DNA repair protein UVH3 1100 1157 - -
Vium6303g00003 1700 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00003 1700 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00003 1700 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 764 786 - -
Vium6303g00003 1700 Gene3D - 1 142 - -
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 129 144 - -
Vium6303g00003 1700 SMART xpgineu 1038 1105 IPR006086 GO:0004518
Vium6303g00003 1700 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6303g00003 Vium-Chr6303 7092 18963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6303g00003 1032 1132 Core DNA Replication Machinery Family AT5G26680 36.036 6.25e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6303g00003 K10846 - gmx:100820295 2512.64