Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6303g00002 ATGGGAGTCCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGCGTCTCCGTGGAAACCCTCGCCGGGAAAACCCTCGCCGTTGATGCGAGCATATGGATGGTGCAGTTTATGAAAGCGATGCGCGACGAGAAGGGGGAAATGGTTCGCAACGCCCATTTGCTGGGATTTTTCCGACGCATTTGCAAGCTTCTATTCCTCCGCACTAAGCCGGTCTTCGTCTTCGACGGCGGGACCCCCGCCCTCAAGCGCCGCACCGTCATTGCCCGCCGCCGGCAGCGCGAAAACGCTCAAGCTAAAGTCCGCAAAACTGCGGAGAAAATGCTGCTCAATCATTTAAAGACACTAAGATTGAAGGAACTGGCTGATGATATTAAGAGCCAGAGGATGCAGAAGAATAGTAATACTAAGGGTCAGAATGGATCTAAAGAAAAGGACTTTGTTGGTAGTGATTCAAGAGGAAGTCACGTGAAAGAGCTAGATGAAATGTCTGCAGCTAAATTTGCAACTAAGGAGGACATAAATTCTTCACAGGCAACATTATCCTCAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAGTGGAAAACATGCTAGAAAAGGAGTGCCGTCTATTATAATTAATCCTTCAGAGGAAGAACATGGCGCAGAAGAACAGATTCTACTGCCATCAGTAAATGCAGAAGTTGATATAGCTGTATTGGCTGCTTTGCCACAGTCTATGCAACTCGATATTCTTGCACAGCTAAAAGGAAAGAAAAAGGAAGTGTTACTAAAGGAAGTTTACAATCACGAACAACATGATGTCGATTATCAGGGCAAGGGCAAAGGGATTCTGCTCAGTGAAGCTGGCATGGTTGGTTGTAGCTCCAGACATGACACTGTTGCACCAAGGACTGACAATCAAGACTCAATTGACGAAATGTTGGCTGCATCTATTGCTCTGGAGGAAAATGAAAAGTTAGTAAATAATGCATCAACTTCTGTTGGGGCTTCCACTATTGAGGAAGATGAAGTTGACTATGACGAAGATGAAGAGATGATACTGCCAGCTATGCATGGTGAAGTTGATCCACTTGTTCTAGCCTCATTACCTCCATCAATGCAGCTGGACCTTCTTGTTCAGATGAGAGAGCGTTTAATTGCAGAGAACAGACAGAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAAATGAAGTGCAGAAAGCTGCAGCTGGAGGAGGAGTAGAGGGTGTACAGACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATATTTTCATCATCTTTTACTGGTGATAAACATGAACTTACCTCCACCGGCTTAGAGAAAAATAAAAGTACAAAAGAGAAGGCACAAGGAACACATTATTCTCAGAATCTTGCAAATAGCATTTTGGCTGGAAATGATTTTAATAAATCAAGTGAATTGATTTCCAATGAACCTGGTGAGCCTGCTGATGAAAATATTCAGACATATATTGATGACAGAGGTCAATTTCGTGTAAGTAGATTGAGAGCAATGGGGATGCGTATGACCCGGGATATACAAAGAAATTTGGATTTGATGAAGGAGTTCGAGCAGGAAAGTGCACAGGTGAACAAGGCTTCAAATATTGGAACAATTAAAAATGGAGAAACTAAGGGTTCATCAGAAAGTTCTGGGATCCAGCCTGTTGGTAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAGAATGTGCAAAATGAACAAATTATGCTAGACCAGAATGCTTCTATCGATATATCTTTTGAATATGGTTGCGAAAATGAGTTTGCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCATTGGCGATATTTGACACTGATGATTCTGCAGCAACAGTGCAACCTTCTCATTCTGATTGGGAAGAAGGAATAGTTGAAGGTAAGAGTACTGTTTTTCCCAAACAGGATAAGGTGGAATTGAAGTCTTCTGTTGCAGATGACGATAATAATAATGAAAGTGAAGTGGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCAGCTTACTGTCAGGAAAATATGCATCCCGAGGGCAGTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTGCAGGGGATGGAAAACACAAATGTATGTCATTGCTTGATGCGCAATCAAATACTTATGAGAACAAATTGGATCACGATTTTGAACATGGTGATCATTCTGAACATGGTGATCATTCTGACCCAATGGCTTTAAATGAGAACACTAGGTTCCTGAATAATAAAAATAAAATGGTGGGAATCACTTTGTGTAGGGAAGATGGTACTGAAAAAAAGGAATTACTTGAAACTGAAGATAGAGATAAAACGCCTGATTTTGTTTCCGTTAATAATGCACAAACTTTCCATTTTCATGGAAGTCCTTCAAAGCCAGCTTTGACTTTTATTTCAGATAAAACTGAGACATTGATTGACACAACTTGCAGATGGGACAGTCACCCTTGTTCTGAAGATTCAATTTCAGATACAAATATAATGACGAAGGACCAGGTCCCTGTGGTTGAAAAGAAGTTATCTGATGAACATGATAATGATAAAGTGTCTTCCTATCATAAGTATACACCCAAGGCTGTTCCAGTTGGCGCAACTGAAGAGGAGAAAAAGAACTATATTAAGGAACCTGAACCATTTAGTAATTGTACTGACACTACCAAACCCACTATTCATTTGGGGGAGTCATCCTTGAAAGGAGTAACAGAAGAGCTTATTGAGCCAAACTTGGCTTCAGAGGGTAATAATGGAATTTTTTTTGACAAAAGGAACAGTAGCCATGGCAGTGATACGGTTAACAGCCCAGGGGATTTTCCTGCTCTAGCAACTCAGGTTAGCCTGGAGAAAGAAATTCACATTCTTGGTCAAGAATATATTAACCTAGAGAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAGTCAGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTAACTGATGACTCTGATGTCCTTCTATTTGGGGCACGCAGTGTCTACAAAAATATATTTGATGACCGAAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGACTGACTAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACCGAAGGTGTAAGTGGGATTGGCATCGTTAATGCTATTGAGGTTTTGAATGCATTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGAAATGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAAAGTGGATCAAATTCCAGAAAGAAAGGATCAAAAGTTGAAGAAAAGATAAATTCCTTAAATTGTGATGCTAAAGAGTCTCCATCAGAGCAGAACCTCCCCCATGCGCTGGAGCAAAATAAGTTGCCAGATTACATTCAAGAAACAAAGCAAACTTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCACATCCCTTCTTCTTTTCCAAGTGAAACAGTTATTTCTGCTTATTGTTCTCCACATGTTGATAAATCAACCGAGCCTTTCACATGGGGGAAGCCAGATCACCTTGTTCTTCGGAAATTGTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAAGCAGACGAATTGCTATTACCTGTGTTAAAGGAGTATAATAAACGTGAGACTCAATTGCGGTTGGAAGCATTTTACAGTTTTAATGAGAGATTTGCGAAAATCCGTAGCAAAAGAATTAAGAAGGCAGTAAAAGGAATAACTGGTAAGCTGCCTTCAGATATGATAGATGATTCTGCAGAGGTGTTGTCCAAGAGTAGGAAGATTGGGAGAGAACCCGAGGATAGCACATTAGAGATTTCAGGGGGAACAGACAAACGTCTTGAACGTCAAAGCAAATCAAAAATAAAACAGTCAACGAAAAGGAAGAATGATACTGTTGCCAAGGAACAGTCAAAGAAAAAGAAAGACAACGATGATCCGTCTTCAGCACCTGGTACATCAGAGATGGAGAATTTACAGCCAAGTATGCAGACAGAAGAACAGTGTGATGGTAAGGCATTAATTCAGAATACAAGTGGCCGAGGAAGACATAGAGGTATGGGAATAAAAAGAGGAAGGGACAATGAGAATCTCAGTTCATCTGCTAGCAGTGACATTGATGATCAGGGATCAAGAGTGCATGTGGATAAGTTTTCAGAACACGTGAGAAAGTCATTGCGATCTCGGAAACCTGTCAACTATTCTTTCGAAGATCCTGAAGATGAAGATGCCGAAGATGCCGATGATGCCTTTGATCATAGTAATCGGACTGGTCCAATTGAAGAAAAATTATCTCAGATTCATGGTGCATCTGAAGATGGTCCAACAGATTTCAGTGCAATGAATTTTCCTTTAAGGGAGAACTCACCAACCGACCCTTTCAAGTCAGAAGGTCCGTTTTGCGTGCATGCAGGTGAAATTAATCATCCTAGTACTGGCAATCATGATTCTTCTACTGGAAATCATGACTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATGGTGACACAGTGGATTCTACTCAAGACTTTTCACACTTTTCTGATTGTTTGGATGAAACTAACCGTGATAAAAACAGTTCAGATATATTATTTTCTGGCACTGAAAAGCCTGAAAATGGGTCAGAAGGTGGAGGAGACTTTTATGACTTTGGTATAAAGCGAAATGACCTTGTAAATACTAGTAGTTATGATCATTCTGACGTAGGGATCTTGAAACCAGAGAATGTTCATAACAATAGTGGAGCCTCCGCTGGAGTTTTCAGTGCTATGCCTTTTTTGAGGAAAAGAAGGAAAAAGTGA 5085 0.4108 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKMLLNHLKTLRLKELADDIKSQRMQKNSNTKGQNGSKEKDFVGSDSRGSHVKELDEMSAAKFATKEDINSSQATLSSSYNQEELDEMLAASIAAEESGKHARKGVPSIIINPSEEEHGAEEQILLPSVNAEVDIAVLAALPQSMQLDILAQLKGKKKEVLLKEVYNHEQHDVDYQGKGKGILLSEAGMVGCSSRHDTVAPRTDNQDSIDEMLAASIALEENEKLVNNASTSVGASTIEEDEVDYDEDEEMILPAMHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTGLEKNKSTKEKAQGTHYSQNLANSILAGNDFNKSSELISNEPGEPADENIQTYIDDRGQFRVSRLRAMGMRMTRDIQRNLDLMKEFEQESAQVNKASNIGTIKNGETKGSSESSGIQPVGKSQEVNVDLVGENVQNEQIMLDQNASIDISFEYGCENEFANGEDDIFSSLVGGNPLAIFDTDDSAATVQPSHSDWEEGIVEGKSTVFPKQDKVELKSSVADDDNNNESEVEWEEGDCDGANSSLLSGKYASRGQLEEESNLQEAIRRSLESAGDGKHKCMSLLDAQSNTYENKLDHDFEHGDHSEHGDHSDPMALNENTRFLNNKNKMVGITLCREDGTEKKELLETEDRDKTPDFVSVNNAQTFHFHGSPSKPALTFISDKTETLIDTTCRWDSHPCSEDSISDTNIMTKDQVPVVEKKLSDEHDNDKVSSYHKYTPKAVPVGATEEEKKNYIKEPEPFSNCTDTTKPTIHLGESSLKGVTEELIEPNLASEGNNGIFFDKRNSSHGSDTVNSPGDFPALATQVSLEKEIHILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFRKWVESPDPTILGRLDAKSGSNSRKKGSKVEEKINSLNCDAKESPSEQNLPHALEQNKLPDYIQETKQTFFNKHRNVSKNWHIPSSFPSETVISAYCSPHVDKSTEPFTWGKPDHLVLRKLCWEKFGWIGQKADELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKLPSDMIDDSAEVLSKSRKIGREPEDSTLEISGGTDKRLERQSKSKIKQSTKRKNDTVAKEQSKKKKDNDDPSSAPGTSEMENLQPSMQTEEQCDGKALIQNTSGRGRHRGMGIKRGRDNENLSSSASSDIDDQGSRVHVDKFSEHVRKSLRSRKPVNYSFEDPEDEDAEDADDAFDHSNRTGPIEEKLSQIHGASEDGPTDFSAMNFPLRENSPTDPFKSEGPFCVHAGEINHPSTGNHDSSTGNHDSSDDYLKMGGGFCLDDGDTVDSTQDFSHFSDCLDETNRDKNSSDILFSGTEKPENGSEGGGDFYDFGIKRNDLVNTSSYDHSDVGILKPENVHNNSGASAGVFSAMPFLRKRRKK 1694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6303g00002 1694 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Vium6303g00002 1694 Gene3D - 992 1106 - -
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 1405 1431 - -
Vium6303g00002 1694 SMART xpgn3 1 98 IPR006085 GO:0004518
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 1465 1493 - -
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 684 709 - -
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 571 590 - -
Vium6303g00002 1694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Vium6303g00002 1694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 1346 1404 - -
Vium6303g00002 1694 FunFam DNA repair protein UVH3 988 1106 - -
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 1619 1642 - -
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 764 783 - -
Vium6303g00002 1694 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00002 1694 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00002 1694 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vium6303g00002 1694 Pfam XPG I-region 1041 1122 IPR006086 GO:0004518
Vium6303g00002 1694 CDD PIN_XPG_RAD2 2 92 - -
Vium6303g00002 1694 FunFam DNA repair protein UVH3 1 147 - -
Vium6303g00002 1694 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1107 1316 IPR036279 -
Vium6303g00002 1694 CDD H3TH_XPG 1110 1254 - -
Vium6303g00002 1694 SUPERFAMILY PIN domain-like 2 1122 IPR029060 -
Vium6303g00002 1694 SMART HhH_4 1109 1142 IPR008918 GO:0003677|GO:0003824
Vium6303g00002 1694 Coils Coil 994 1028 - -
Vium6303g00002 1694 SMART xpgineu 1038 1107 IPR006086 GO:0004518
Vium6303g00002 1694 ProSitePatterns XPG protein signature 2. 1041 1055 IPR019974 GO:0016788
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 1450 1464 - -
Vium6303g00002 1694 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Vium6303g00002 1694 FunFam DNA repair protein UVH3 1107 1164 - -
Vium6303g00002 1694 CDD PIN_XPG_RAD2 1024 1108 - -
Vium6303g00002 1694 Gene3D - 1107 1169 - -
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 1346 1584 - -
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 764 786 - -
Vium6303g00002 1694 Gene3D - 1 142 - -
Vium6303g00002 1694 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 260 - -
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 129 144 - -
Vium6303g00002 1694 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6303g00002 Vium-Chr6303 7092 18963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6303g00002 1032 1139 Core DNA Replication Machinery Family AT5G26680 36.937 7.21e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6303g00002 K10846 - gmx:100820295 2516.11