Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6302g00007 ATGTTATTTTACTTGGTTACGCAAAGAAGCAAGCCAGCACTAGGTTTGATTAATTGGAGCAGGAGGGTTACTCTGATGACTTGTTTCTTTAATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACTCGATTGACCGGAGTTGATTTAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGGGAATTGCGAAGTGCCACCGAAGGTTTTAGTCCTGCAAACAAGATAGGGCAGGGCGGTTTTGGAGAAGTCTATAAGGGAAAGCTGAGAAATGGTTCTCTGGTAGCTATAAAGGTTTTATCAGCTGAATCAAAACAAGGGGTTCGGGAGTTTTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTTAAGTTGCATGGATGTTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTCGAGAATAACAGTCTAGCACAAACACTTATTGGTGCAGGCCATAGTAACATCCAATTTAGTTGGCCCACAAGAAGGAACATTTGTGTAGGTGTTGCCAGGGGCCTTGCATTCCTTCATGAAGAGGTTCGGCCCCACATTATCCATAGAGACATAAAATCAAGCAATGTACTACTTGACAAAGATCTCCAGCCAAAAATTTCAGATTTTGGGCTTGCAAAGCTTATCCCACCAAACCTGACCCATATCAGTACACGTGTTGCTGGAACAGTTGGTTATCTTGCTCCTGAATATGCAATCCGAAATCAAGTCACAAGAAAATCAGATGTTTATAGCTTTGGAGTTCTATTATTAGAAATTGTTAGTGGGAGGCCTAACACAAATAGACGTTTACCTGTCGAAGAACGGTATCTTCTCACAAGGGCTTGGGATTTGTATGAGGCTGGAGAGACAGAAAAATTGGTGGATGCTTTTCTAGATGGAGACTTCAATGTTGAGGAGGCAATCAGATTTTGTAAGATTGCTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGACCCTCTATGTCCATTGTGCTTGAAATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCATGCAAACAAAAGGGCAAGTCTGAAGAGAATGGTAAACTTATGTTGGCTGAAGGGAAGCAAGATGAGTCATCTTCTTCCGAAACCATGACCTCTTTTGCTACCATGACCTTACAGCAATATGTGATCAAAGTAATTAATTTGATTGTCACTAGATAG 1263 0.4093 MLFYLVTQRSKPALGLINWSRRVTLMTCFFNLFRKKGSSSGTRLTGVDLDVSEIQNVNIYTYRELRSATEGFSPANKIGQGGFGEVYKGKLRNGSLVAIKVLSAESKQGVREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGAGHSNIQFSWPTRRNICVGVARGLAFLHEEVRPHIIHRDIKSSNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTVGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPVEERYLLTRAWDLYEAGETEKLVDAFLDGDFNVEEAIRFCKIALLCTQDSPQLRPSMSIVLEMLLGEKDVNEENVTKPGMIFEFVEAKSACKQKGKSEENGKLMLAEGKQDESSSSETMTSFATMTLQQYVIKVINLIVTR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6302g00007 420 Gene3D Phosphorylase Kinase; domain 1 47 147 - -
Vium6302g00007 420 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Vium6302g00007 420 Gene3D Transferase(Phosphotransferase) domain 1 148 358 - -
Vium6302g00007 420 Pfam Protein kinase domain 75 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6302g00007 420 ProSiteProfiles Protein kinase domain profile. 72 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6302g00007 420 FunFam cold-responsive protein kinase 1 44 147 - -
Vium6302g00007 420 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 37 390 - -
Vium6302g00007 420 FunFam Putative LRR receptor-like serine/threonine-protein kinase 148 355 - -
Vium6302g00007 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vium6302g00007 420 SUPERFAMILY Protein kinase-like (PK-like) 51 343 IPR011009 -
Vium6302g00007 420 SMART serkin_6 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6302g00007 420 CDD STKc_IRAK 78 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6302g00007 Vium-Chr6302 30814 36014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6302g00007 50 360 Receptor kinase-like Gene Family AT1G56120 53.333 1.20e-105 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium6302g00007 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6302g00007 - - gmx:100801735 711.064