Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6302g00006 ATGACTTGTTTCTTTAATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACTCGATTGACCGGAGTTGATTTAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGGGAATTGCGAAGTGCCACCGAAGGTTTTAGTCCTGCAAACAAGATAGGGCAGGGCGGTTTTGGAGAAGTCTATAAGGGAAAGCTGAGAAATGGTTCTCTGGTAGCTATAAAGGTTTTATCAGCTGAATCAAAACAAGGGGTTCGGGAGTTTTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTTAAGTTGCATGGATGTTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTCGAGAATAACAGTCTAGCACAAACACTTATTGGTGCAGGCCATAGTAACATCCAATTTAGTTGGCCCACAAGAAGGAACATTTGTGTAGGTGTTGCCAGGGGCCTTGCATTCCTTCATGAAGAGGTTCGGCCCCACATTATCCATAGAGACATAAAATCAAGCAATGTACTACTTGACAAAGATCTCCAGCCAAAAATTTCAGATTTTGGGCTTGCAAAGCTTATCCCACCAAACCTGACCCATATCAGTACACGTGTTGCTGGAACAGTTGGTTATCTTGCTCCTGAATATGCAATCCGAAATCAAGTCACAAGAAAATCAGATGTTTATAGCTTTGGAGTTCTATTATTAGAAATTGTTAGTGGGAGGCCTAACACAAATAGACGTTTACCTGTCGAAGAACGGTATCTTCTCACAAGGGCTTGGGATTTGTATGAGGCTGGAGAGACAGAAAAATTGGTGGATGCTTTTCTAGATGGAGACTTCAATGTTGAGGAGGCAATCAGATTTTGTAAGATTGCTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGACCCTCTATGTCCATTGTGCTTGAAATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCATGCAAACAAAAGGGCAAGTCTGAAGAGAATGGTAAACTTATGTTGGCTGAAGGGAAGCAAGATGAGTCATCTTCTTCCGAAACCATGACCTCTTTTGCTACCATGACCTTACAGCAATATGTGATCAAAGTAATTAATTTGATTGTCACTAGATAG 1188 0.4091 MTCFFNLFRKKGSSSGTRLTGVDLDVSEIQNVNIYTYRELRSATEGFSPANKIGQGGFGEVYKGKLRNGSLVAIKVLSAESKQGVREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGAGHSNIQFSWPTRRNICVGVARGLAFLHEEVRPHIIHRDIKSSNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTVGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPVEERYLLTRAWDLYEAGETEKLVDAFLDGDFNVEEAIRFCKIALLCTQDSPQLRPSMSIVLEMLLGEKDVNEENVTKPGMIFEFVEAKSACKQKGKSEENGKLMLAEGKQDESSSSETMTSFATMTLQQYVIKVINLIVTR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6302g00006 395 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 365 - -
Vium6302g00006 395 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6302g00006 395 SMART serkin_6 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6302g00006 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vium6302g00006 395 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vium6302g00006 395 CDD STKc_IRAK 53 318 - -
Vium6302g00006 395 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 330 - -
Vium6302g00006 395 Gene3D Phosphorylase Kinase; domain 1 22 122 - -
Vium6302g00006 395 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Vium6302g00006 395 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Vium6302g00006 395 FunFam cold-responsive protein kinase 1 19 122 - -
Vium6302g00006 395 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6302g00006 Vium-Chr6302 30694 36014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6302g00006 19 324 Receptor kinase-like Gene Family AT1G53430 55.229 6.46e-106 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium6302g00006 Pkinase 4.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6302g00006 - - gmx:100801735 684.485