Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6301g00013 ATGGCAGCAGAACTTGTTGGTGGTGCTCTTCTTTCCGCTTTTCTTCAGGTTGCATTCGACAGGCTGGCATCTCCTCAATTCATAGACTTATTTCGTGAAAGAAAACTTGATGAAAAGCTGCTCGGCAACTTGAACATCATGCTGCACTCCATCAAAGCTCTAGCTCATGATGCAGAACAGAAGCAGTTCACAGATCCAAACGTTAAAGCGTGGCTTTTTTCTGTCAAAGAGGCTGTGTTTGATGCCGAGGATCTCTTGGTTGAAATAGATTATGAACTCACCAGATCCCAAGTGGAAGCTGAATCCGAACCTCGTACCTTTACTTACAAGGTATCAAATTTCTTCAACTCTACTTTCAATTCGTTTAACAAGAAAATTGAATCAGAAATGAAAGAAGTCTTAGGAAAACTAGAATATCTAGCAAAGCAAAAGGGTGCTCTTGGTCTGAAAGAGGGTACTTATTCTGGTGATAGATCAGGTGGTAAAGTGTCACAGAAATTGCCATCATCTTCTTTGGTGGTTGAAAGTGTTATTTATGGCAGAGATGCCGACAAAGAAATGATCTTTAATTGGCTCACTTCTGAGACCGACAATCATAACCATCTATCCATACTTTCCATAGTGGGCATGGGTGGGTTGGGTAAGACCACACTCGCCCAACATGTATACAATGACCCAAAAATGGAGACTGAATTTGATATAAGAGCTTGGGTTTGTGTTTCCGATCATTTTGATATTTTGACAGTCACAAAAACAATTCTTGAAGCAATCACAAAATTTAGAGATGATAGCAGAGACCTAGAAATGGTTCATGGAAGATTGAAAGAAAAAGTATCAGGAAAGAAATTTCTTCTTGTTTTGGATGATGTTTGGAGCGAAAGGCGAGAAGAATGGGAAGCTGTGCGAACTCCTCTTAGCTATGGGGCTCCAGGAAGTAGAATTCTTGTCACAACACGTGCTTTGAAAGTTGCTTCTAACATGAGATCTAAAGTGCATCGCCTCAAGCATTTAGAAGAAGATGAATGCTGGAAAGTTTTTGAAGAACAAGCTGTAAAAGATGATGATCTTGAAATGAATGATGAGAAAAAGGAGATTGGTAGAAGGATAGTTGAGAAGTGCAAAGGATTACCTCTTGCTTTGAAAACAATTGGAAGTCTTCTCCGCACAAAGTCATCCATTTCAGATTGGAAAAGCGTATTGGAAAGCGACATATGGGACTTACCGAAAGAAGTTGAAATTATGCCTGCTCTGTTATTGAGTTATCAGCACCTTCCTTCTCACCTCAAGAGGTGTTTTGCTTATTGTGCGTTATTTCCAAAAGATTATGAATTTTACAAAAAGGAATTAATTTTGTTGTGGATGGGTGAAGGTTTTCTCCATCATTCTCAACAGAACAAGAATGTAGAAGAAATTGGTGAACAGTATTTCGATGATTTATTAACGAGGTCTTTCTTTCTTCAATCAAGCTCCGAATTGCAATTCGTCATGCATGACCTTCTGAATGATTTGGCAAAATATGTTTGTGCAGATTTCTGTTTCAGGTTGAAATTTGATAAAGGAAACTGTATACCCAAAAAAACCCGTCATTTTTCATTTGCAAACAATGATATAAGATATTTAGATGGTTTTGGGAGTTTAACTGATGCTAAAAGACTGCGTTCATTTGTTCAGATTACAAATTACTGTAAATATCACGGTCTTCGTGGTCCATTCGAGATTTTGATATGTGAAGTGTTCTCCAAGTTGAAGTTTTTACGCGTCATATCTTTGAAAGGGTATTATAGACTGAAAGAGGTCCCGGATTCTGTTGGTGATCTTAAACATCTCCATTCATTGGACCTTTCTCATACTAAGATACCAAAACTACCTAACACAGTAGGTTTGCTCTATAACTTGCTGATATTGAGGTTGAATGGTTGTTCATATTTGAAGGAATTGCCTTCAAGTTTGCGTAAACTCACCAAATTGCGTTGCATGGAGTTTGAAGATACAAAAGTGACAAAGATGCCAATGCATTTTGAACAGGTGAAGAATCTTCATGTACTGAATATGTATTGTGTCAGTAGAAATAGTGAGTTCAGTATTAAGCAGCTAGGTGGAATCAATCTTCATGAAAGGCTATCAATTAATGAACTGCAAAATATTGAGAATCCTTTGGATGCATTAGAAGCGAATTTGAAAAATAAACAACTTGTGGGACTAAAGTTAATATGGAATCCGAATCACATCCCCGATAATCCAATGAAAGAGAAGAAAGTGCTTGAGAATCTACAACCTTCTAATCAGTTGGAGCATCTTTCAATCAGGAGCTATTGTGGTATAGAATTCCCAAGTTGGGTATTCGATAATTCGTTATCAAATTTGGTATCCTTAGAGTTAATAGATTGTAAATATTGCCTATATTTGCCTTCCCTTGGATTATTGTCATCTCTGAAGACCCTCGATATT 2448 0.3754 MAAELVGGALLSAFLQVAFDRLASPQFIDLFRERKLDEKLLGNLNIMLHSIKALAHDAEQKQFTDPNVKAWLFSVKEAVFDAEDLLVEIDYELTRSQVEAESEPRTFTYKVSNFFNSTFNSFNKKIESEMKEVLGKLEYLAKQKGALGLKEGTYSGDRSGGKVSQKLPSSSLVVESVIYGRDADKEMIFNWLTSETDNHNHLSILSIVGMGGLGKTTLAQHVYNDPKMETEFDIRAWVCVSDHFDILTVTKTILEAITKFRDDSRDLEMVHGRLKEKVSGKKFLLVLDDVWSERREEWEAVRTPLSYGAPGSRILVTTRALKVASNMRSKVHRLKHLEEDECWKVFEEQAVKDDDLEMNDEKKEIGRRIVEKCKGLPLALKTIGSLLRTKSSISDWKSVLESDIWDLPKEVEIMPALLLSYQHLPSHLKRCFAYCALFPKDYEFYKKELILLWMGEGFLHHSQQNKNVEEIGEQYFDDLLTRSFFLQSSSELQFVMHDLLNDLAKYVCADFCFRLKFDKGNCIPKKTRHFSFANNDIRYLDGFGSLTDAKRLRSFVQITNYCKYHGLRGPFEILICEVFSKLKFLRVISLKGYYRLKEVPDSVGDLKHLHSLDLSHTKIPKLPNTVGLLYNLLILRLNGCSYLKELPSSLRKLTKLRCMEFEDTKVTKMPMHFEQVKNLHVLNMYCVSRNSEFSIKQLGGINLHERLSINELQNIENPLDALEANLKNKQLVGLKLIWNPNHIPDNPMKEKKVLENLQPSNQLEHLSIRSYCGIEFPSWVFDNSLSNLVSLELIDCKYCLYLPSLGLLSSLKTLDI 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6301g00013 816 Gene3D Ribonuclease Inhibitor 525 816 IPR032675 -
Vium6301g00013 816 Gene3D - 336 419 IPR042197 -
Vium6301g00013 816 SUPERFAMILY L domain-like 495 815 - -
Vium6301g00013 816 Gene3D - 420 506 IPR036388 -
Vium6301g00013 816 Pfam NB-ARC domain 182 401 IPR002182 GO:0043531
Vium6301g00013 816 Gene3D - 161 335 IPR027417 -
Vium6301g00013 816 Gene3D - 33 144 - -
Vium6301g00013 816 ProSiteProfiles Leucine-rich repeat profile. 608 629 IPR001611 GO:0005515
Vium6301g00013 816 FunFam Probable disease resistance protein At1g61300 162 332 - -
Vium6301g00013 816 FunFam Probable disease resistance protein At1g63360 421 506 - -
Vium6301g00013 816 PANTHER DISEASE RESISTANCE PROTEIN RP 51 814 IPR044974 GO:0006952
Vium6301g00013 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 435 IPR027417 -
Vium6301g00013 816 PRINTS Disease resistance protein signature 373 387 - -
Vium6301g00013 816 PRINTS Disease resistance protein signature 806 816 - -
Vium6301g00013 816 PRINTS Disease resistance protein signature 204 219 - -
Vium6301g00013 816 PRINTS Disease resistance protein signature 277 291 - -
Vium6301g00013 816 Pfam Rx N-terminal domain 11 103 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6301g00013 Vium-Chr6301 104401 107057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6301g00013 202 507 WRKY Transcription Factor Family AT5G45050 27.692 6.07e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6301g00013 - - vra:106774688 1320.45