Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6301g00004 ATGCCTGGAGGGAGCAGCAAAAGAAGGATACATTTTAGCAAATTGTACAGTTTTTCTTGTTTGAAATCTCGTTTCAGAGATGGTCATTCCCAAATTGGGCAGAAGGGGTACTCCAGGGTTGTGTACTGCAATGATCCAGATAACCCTGAAGCAGTTCACTTGAGTTATGGAGGCAATTATGTTTCAACAACCAAGTATACAGCTTTTAATTTTATCCCCAAGTCTTTGTTTGAGCAGTTCAGGAGGGTTGCAAATATCTACTTTCTCATTGTTGCGTGTCTTTCATTTAGTCCATTGGCACCTTTTACTGCTCTGAGTATTGTTGCTCCGTTGCTGGTTGTGATTGGAGCTACTATGGCAAAGGAAGCTGTGGAAGATTGGAGGAGGAGAAAACAGGATGTAGAGGCAAACAACAGAAAGGTTCAGGTATATGGTAGAAACTATACGTTTACGGAGACTAGATGGAAGAAACTCCGTGTTGGGGATATCATTAAAGTGTACAAGGATGAATACTTTCCTGCTGATCTTCTTTTGCTTTCATCAAGCTATGGTGACGGGGTTTGTTATGTGGAGACTATGAATCTTGACGGAGAAACTAATCTAAAATTAAAGCATGCTTTGGAGGTGACAGTTCATCTTCATGATGAAAAATCCCTACAAAAGTTTAGGGCTATGGTTAAATGTGAGGATCCTAATGAAAATCTGTACTCATTTATTGGAACTTTACAACATGATGGTAAAGAATATCCTCTTTCCTTGCAGCAGATCCTGTTAAGAGATTCTAAGTTGAAAAACACTGATTTTATCTATGGCATTGTTATCTTTACTGGCCATGATACGAAAGTTATGCAGAATTCCACTGATCCTCCGTCCAAGAGAAGCAAAATTGAGAGGAAAATGGATAAGATAATCTACATCCTCTTCAGTACCTTGGTTTTGATATCCTTTATTGGTTCAGTCTTTTTTGGTATTGAGACCAAAAAGGATATTAGTGGTGGAAGGTATAGAAGATGGTATCTTCGTCCAAACAATGCAACAGTGTTCTATGATCCCAGAAGGGCAACACTTGCTGCTGTTCTTCATTTTTTGACTGCCATTATGTTGTATGGATATCTAATTCCGATATCACTTTACGTGTCCATAGAAATTGTGAAAGTTCTACAGAGCATTTTCATCAACCAAGACCAAGAAATGTATCATGAAGAATCAGATAGGCCTGCTCATGCACGAACATCAAATTTGAATGAAGAACTTGGCCAGGTTGACACAATATTGAGTGACAAAACTGGTACTTTGACATGTAACTCAATGGAGTTTGTCAAATGTTCAATAGGGGGCATTGCATATGGTCGTGGTATGACAGAAGTAGAGAAGGCACTTGCTAGGAGAAGAAAAGGTGGAGAATCTGATGTTGATAGTGGATCATCTGATTTCTTGGGCCAGAATAATGAGTCAGTTGATTTTCTGCATCCAGTTAAGGGCTTTAATTTAAGCGATGAGCGCCTAATGAATGGGCAATGGGTTAATGAACCATATCCAGACTTCATACAAAAATTCTTCCGAGTTTTAGCTATTTGTCACACAGCTATTCCAGACGAAGATAAAGAATCCAGAGAAATTTCCTATGAAGCCGAGTCACCAGATGAAGCAGCTTTTGTCATAGCAGCAAGGGAGCTCGGTTTTGAGTTTTTTGCAAGGACACAAACAAGCATATCATTGCACGAATTGAACTATGAAAGTGGAAAAAAGGTTGACAGTAGAGTGTACCAGCTTCTGCATGTCTTGGAGTTCAGCAGTTCCCGCAAAAGAATGTCAGTGATAGTGAGGAATGAGGAAAATCAATTATTGCTTCTATGCAAGGGTGCAGACAGTGTAATGTTTGAAAGGCTCTCACAATATGGAAGACAATTTGAGGTTGAAACGAGGGATCATATCAAAAGGTATGCCGAGGCTGGTTTAAGAACCCTTGTAGTCACATACCGTGAACTTGATGAAGAAGAATATAAGTTATGGGATAAGGAGTTTTCAAAGGTCAAAACTTCTGTAACAGAAGACCGAGATGCACTTGTGGATGCAGCTGCTGATAGGATGGAAAGAGATTTGATACTTCTTGGTGCTACTGCAGTTGAGGATAGACTGCAAAAGGGGGTTCCAGAGTGTATTGAAAAGCTTGCACGGGCAAAAATCAAGTTATGGGTATTGACTGGAGACAAGATGGAAACTGCTGTCAACATAGGGTATGCTTGCAGTTTACTTAGAAAAGACATGAAACAGATAGTGATCACTCTTGATTCCTCAGATATCCTATACTTGGAAAAACAAGGGGACAAGCAGGCTCTAGCAAAGGCTTCTCTTGAAAGCATTAAGAAGCAAATTGGAGAAGGAATCTCACAAATTAACTCTGCAAAAGATAGTTCTAATGCAAATAAAGGAAGTTCTTCTGGGTTTGGTTTGATAATAGATGGGAACTCCTTGGATTATTCTCTTATCAAGAATTTGGAAAGGTCCTTCTTTGAGCTTGCCATGAATTGTTCTTCTGTCATATGTTGCCGATCTTCACCCAAACAAAAAGCTCGTGTTACAAGGTTGGTAAAATTGGGAACGGGGAAGACAACATTATCTATTGGTGACGGGGCAAATGATGTTGGCATGCTTCAGGAGGCTGATATTGGAGTTGGTATTAGTGGTGCTGAAGGGATGCAGGTATGTCATTGCATTTGGATTATTTCAAATTAA 2736 0.3962 MPGGSSKRRIHFSKLYSFSCLKSRFRDGHSQIGQKGYSRVVYCNDPDNPEAVHLSYGGNYVSTTKYTAFNFIPKSLFEQFRRVANIYFLIVACLSFSPLAPFTALSIVAPLLVVIGATMAKEAVEDWRRRKQDVEANNRKVQVYGRNYTFTETRWKKLRVGDIIKVYKDEYFPADLLLLSSSYGDGVCYVETMNLDGETNLKLKHALEVTVHLHDEKSLQKFRAMVKCEDPNENLYSFIGTLQHDGKEYPLSLQQILLRDSKLKNTDFIYGIVIFTGHDTKVMQNSTDPPSKRSKIERKMDKIIYILFSTLVLISFIGSVFFGIETKKDISGGRYRRWYLRPNNATVFYDPRRATLAAVLHFLTAIMLYGYLIPISLYVSIEIVKVLQSIFINQDQEMYHEESDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIGGIAYGRGMTEVEKALARRRKGGESDVDSGSSDFLGQNNESVDFLHPVKGFNLSDERLMNGQWVNEPYPDFIQKFFRVLAICHTAIPDEDKESREISYEAESPDEAAFVIAARELGFEFFARTQTSISLHELNYESGKKVDSRVYQLLHVLEFSSSRKRMSVIVRNEENQLLLLCKGADSVMFERLSQYGRQFEVETRDHIKRYAEAGLRTLVVTYRELDEEEYKLWDKEFSKVKTSVTEDRDALVDAAADRMERDLILLGATAVEDRLQKGVPECIEKLARAKIKLWVLTGDKMETAVNIGYACSLLRKDMKQIVITLDSSDILYLEKQGDKQALAKASLESIKKQIGEGISQINSAKDSSNANKGSSSGFGLIIDGNSLDYSLIKNLERSFFELAMNCSSVICCRSSPKQKARVTRLVKLGTGKTTLSIGDGANDVGMLQEADIGVGISGAEGMQVCHCIWIISN 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6301g00004 911 Coils Coil 117 137 - -
Vium6301g00004 911 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Vium6301g00004 911 FunFam Phospholipid-transporting ATPase 704 908 - -
Vium6301g00004 911 Pfam Cation transport ATPase (P-type) 526 632 - -
Vium6301g00004 911 NCBIfam phospholipid-translocating P-type ATPase 56 904 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium6301g00004 911 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 38 902 - -
Vium6301g00004 911 Gene3D - 704 909 IPR023214 -
Vium6301g00004 911 SFLD p-type atpase 407 902 IPR044492 -
Vium6301g00004 911 Gene3D - 112 288 - -
Vium6301g00004 911 SUPERFAMILY HAD-like 420 901 IPR036412 -
Vium6301g00004 911 Gene3D - 549 703 IPR023299 GO:0000166
Vium6301g00004 911 Pfam E1-E2 ATPase 137 331 - -
Vium6301g00004 911 FunFam Phospholipid-transporting ATPase 117 287 - -
Vium6301g00004 911 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Vium6301g00004 911 PRINTS P-type cation-transporting ATPase superfamily signature 875 894 - -
Vium6301g00004 911 Pfam Phospholipid-translocating ATPase N-terminal 41 104 IPR032631 -
Vium6301g00004 911 SUPERFAMILY Calcium ATPase, transduction domain A 144 285 IPR008250 -
Vium6301g00004 911 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 419 IPR023298 -
Vium6301g00004 911 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 432 669 IPR023299 GO:0000166
Vium6301g00004 911 FunFam Phospholipid-transporting ATPase 545 704 - -
Vium6301g00004 911 SFLD Haloacid Dehalogenase 407 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6301g00004 Vium-Chr6301 42182 101313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6301g00004 1 901 Primary Pumps ATPases AT1G68710 64.751 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6301g00004 K01530 - gmx:100817020 1616.28