Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6301g00003 ATGCCTGGAGGGAGCAGCAAAAGAAGGATACATTTTAGCAAATTGTACAGTTTTTCTTGTTTGAAATCTCGTTTCAGAGATGGTCATTCCCAAATTGGGCAGAAGGGGTACTCCAGGGTTGTGTACTGCAATGATCCAGATAACCCTGAAGCAGTTCACTTGAGTTATGGAGGCAATTATGTTTCAACAACCAAGTATACAGCTTTTAATTTTATCCCCAAGTCTTTGTTTGAGCAGTTCAGGAGGGTTGCAAATATCTACTTTCTCATTGTTGCGTGTCTTTCATTTAGTCCATTGGCACCTTTTACTGCTCTGAGTATTGTTGCTCCGTTGCTGGTTGTGATTGGAGCTACTATGGCAAAGGAAGCTGTGGAAGATTGGAGGAGGAGAAAACAGGATGTAGAGGCAAACAACAGAAAGGTTCAGGTATATGGTAGAAACTATACGTTTACGGAGACTAGATGGAAGAAACTCCGTGTTGGGGATATCATTAAAGTGTACAAGGATGAATACTTTCCTGCTGATCTTCTTTTGCTTTCATCAAGCTATGGTGACGGGGTTTGTTATGTGGAGACTATGAATCTTGACGGAGAAACTAATCTAAAATTAAAGCATGCTTTGGAGGTGACAGTTCATCTTCATGATGAAAAATCCCTACAAAAGTTTAGGGCTATGGTTAAATCAGATCCTGTTAAGAGATTCTTTACTGGCCATGATACGAAAGTTATGCAGAATTCCACTGATCCTCCGTCCAAGAGAAGCAAAATTGAGAGGAAAATGGATAAGATAATCTACATCCTCTTCAGTACCTTGGTTTTGATATCCTTTATTGGTTCAGTCTTTTTTGGTATTGAGACCAAAAAGGATATTAGTGGTGGAAGGTATAGAAGATGGTATCTTCGTCCAAACAATGCAACAGTGTTCTATGATCCCAGAAGGGCAACACTTGCTGCTGTTCTTCATTTTTTGACTGCCATTATGTTGTATGGATATCTAATTCCGATATCACTTTACGTGTCCATAGAAATTGTGAAAGTTCTACAGAGCATTTTCATCAACCAAGACCAAGAAATGTATCATGAAGAATCAGATAGGCCTGCTCATGCACGAACATCAAATTTGAATGAAGAACTTGGCCAGGTTGACACAATATTGAGTGACAAAACTGGTACTTTGACATGTAACTCAATGGAGTTTGTCAAATGTTCAATAGGGGGCATTGCATATGGTCGTGGTATGACAGAAGTAGAGAAGGCACTTGCTAGGAGAAGAAAAGGTGGAGAATCTGATGTTGATAGTGGATCATCTGATTTCTTGGGCCAGAATAATGAGTCAGTTGATTTTCTGCATCCAGTTAAGGGCTTTAATTTAAGCGATGAGCGCCTAATGAATGGGCAATGGGTTAATGAACCATATCCAGACTTCATACAAAAATTCTTCCGAGTTTTAGCTATTTGTCACACAGCTATTCCAGACGAAGATAAAGAATCCAGAGAAATTTCCTATGAAGCCGAGTCACCAGATGAAGCAGCTTTTGTCATAGCAGCAAGGGAGCTCGGTTTTGAGTTTTTTGCAAGGACACAAACAAGCATATCATTGCACGAATTGAACTATGAAAGTGGAAAAAAGGTTGACAGTAGAGTGTACCAGCTTCTGCATGTCTTGGAGTTCAGCAGTTCCCGCAAAAGAATGTCAGTGATAGTGAGGAATGAGGAAAATCAATTATTGCTTCTATGCAAGGGTGCAGACAGTGTAATGTTTGAAAGGCTCTCACAATATGGAAGACAATTTGAGGTTGAAACGAGGGATCATATCAAAAGGTATGCCGAGGCTGGTTTAAGAACCCTTGTAGTCACATACCGTGAACTTGATGAAGAAGAATATAAGTTATGGGATAAGGAGTTTTCAAAGGTCAAAACTTCTGTAACAGAAGACCGAGATGCACTTGTGGATGCAGCTGCTGATAGGATGGAAAGAGATTTGATACTTCTTGGTGCTACTGCAGTTGAGGATAGACTGCAAAAGGGGGTTCCAGAGTGTATTGAAAAGCTTGCACGGGCAAAAATCAAGTTATGGGTATTGACTGGAGACAAGATGGAAACTGCTGTCAACATAGGGTATGCTTGCAGTTTACTTAGAAAAGACATGAAACAGATAGTGATCACTCTTGATTCCTCAGATATCCTATACTTGGAAAAACAAGGGGACAAGCAGGCTCTAGCAAAGGCTTCTCTTGAAAGCATTAAGAAGCAAATTGGAGAAGGAATCTCACAAATTAACTCTGCAAAAGATAGTTCTAATGCAAATAAAGGAAGTTCTTCTGGGTTTGGTTTGATAATAGATGGGAACTCCTTGGATTATTCTCTTATCAAGAATTTGGAAAGGTCCTTCTTTGAGCTTGCCATGAATTGTTCTTCTGTCATATGTTGCCGATCTTCACCCAAACAAAAAGCTCGTGTTACAAGGTTGGTAAAATTGGGAACGGGGAAGACAACATTATCTATTGGTGACGGGGCAAATGATGTTGGCATGCTTCAGGAGGCTGATATTGGAGTTGGTATTAGTGGTGCTGAAGGGATGCAGGTATGTCATTGCATTTGGATTATTTCAAATTAA 2616 0.3995 MPGGSSKRRIHFSKLYSFSCLKSRFRDGHSQIGQKGYSRVVYCNDPDNPEAVHLSYGGNYVSTTKYTAFNFIPKSLFEQFRRVANIYFLIVACLSFSPLAPFTALSIVAPLLVVIGATMAKEAVEDWRRRKQDVEANNRKVQVYGRNYTFTETRWKKLRVGDIIKVYKDEYFPADLLLLSSSYGDGVCYVETMNLDGETNLKLKHALEVTVHLHDEKSLQKFRAMVKSDPVKRFFTGHDTKVMQNSTDPPSKRSKIERKMDKIIYILFSTLVLISFIGSVFFGIETKKDISGGRYRRWYLRPNNATVFYDPRRATLAAVLHFLTAIMLYGYLIPISLYVSIEIVKVLQSIFINQDQEMYHEESDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIGGIAYGRGMTEVEKALARRRKGGESDVDSGSSDFLGQNNESVDFLHPVKGFNLSDERLMNGQWVNEPYPDFIQKFFRVLAICHTAIPDEDKESREISYEAESPDEAAFVIAARELGFEFFARTQTSISLHELNYESGKKVDSRVYQLLHVLEFSSSRKRMSVIVRNEENQLLLLCKGADSVMFERLSQYGRQFEVETRDHIKRYAEAGLRTLVVTYRELDEEEYKLWDKEFSKVKTSVTEDRDALVDAAADRMERDLILLGATAVEDRLQKGVPECIEKLARAKIKLWVLTGDKMETAVNIGYACSLLRKDMKQIVITLDSSDILYLEKQGDKQALAKASLESIKKQIGEGISQINSAKDSSNANKGSSSGFGLIIDGNSLDYSLIKNLERSFFELAMNCSSVICCRSSPKQKARVTRLVKLGTGKTTLSIGDGANDVGMLQEADIGVGISGAEGMQVCHCIWIISN 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6301g00003 871 Coils Coil 117 137 - -
Vium6301g00003 871 Pfam Phospholipid-translocating ATPase N-terminal 41 104 IPR032631 -
Vium6301g00003 871 SUPERFAMILY Calcium ATPase, transduction domain A 144 210 IPR008250 -
Vium6301g00003 871 SFLD p-type atpase 367 862 IPR044492 -
Vium6301g00003 871 FunFam Phospholipid-transporting ATPase 505 664 - -
Vium6301g00003 871 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 235 862 - -
Vium6301g00003 871 Gene3D - 664 869 IPR023214 -
Vium6301g00003 871 FunFam Phospholipid-transporting ATPase 664 868 - -
Vium6301g00003 871 ProSitePatterns E1-E2 ATPases phosphorylation site. 387 393 IPR018303 -
Vium6301g00003 871 SFLD Haloacid Dehalogenase 367 862 - -
Vium6301g00003 871 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 379 IPR023298 -
Vium6301g00003 871 PRINTS P-type cation-transporting ATPase superfamily signature 385 399 - -
Vium6301g00003 871 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Vium6301g00003 871 Gene3D - 509 663 IPR023299 GO:0000166
Vium6301g00003 871 Pfam E1-E2 ATPase 137 291 - -
Vium6301g00003 871 SUPERFAMILY HAD-like 380 861 IPR036412 -
Vium6301g00003 871 Gene3D - 113 257 - -
Vium6301g00003 871 Pfam Cation transport ATPase (P-type) 486 592 - -
Vium6301g00003 871 NCBIfam phospholipid-translocating P-type ATPase 235 864 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium6301g00003 871 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 392 629 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6301g00003 Vium-Chr6301 42181 101313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6301g00003 1 861 Primary Pumps ATPases AT1G68710 61.215 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6301g00003 K01530 - gmx:100817020 1504.58