Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6301g00001 ATGGAGCATGTTTTGGAAAAAAGATTCCCTCTTAATGCAGAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGCGTTAGTGCCTCTGTATACAGGGCTCTTTGTGTTCCTCTCAACGAGATAGTTGCAATCAAGGTTCTGGATCTAGAGAAGTGCAATAATGATTTGGATGGAATTCGAAGAGAGGTACAGACGATGAGCTTGATTGATCATCCAAATGTTTTACAGGCACATTGCTCTTTTACTACTGGACACAATCTATGGGTTGTAATGCCATACATGGCAGGGGGTTCTTGCCTCCATATAATGAAATCTGCCTATCCAGAAGGTTTTGAAGAGCCAGTTATTGCTACTTTATTGCATGAAGTTCTCAAAGCTCTTGTTTATCTTCATGCCCATGGTCACATACATAGAGATGTTAAGGCGGGGAATATTCTGCTTGATTCTAATGGTGCTGTCAAACTAGCTGATTTTGGAGTGTCAGCATGTATGTTTGATACTGGAGACAGGCAACGTTCAAGGAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCCGAAGTCATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCTATGAAAGTTTTGCTTATGACTTTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGGCTTTCAAGGAGTTGGTTGCCACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCCAGTTCAGAAAAGCTATTAAAGCACCACTTCTTTAGACATGCACGTGCTAGCAAATATCTTGCTCGCACCATTCTAGATGGGCTTGCTCCTTTAGGAGATCGTTTTAGATCGCTAAAGGCAAAAGAGGCAGATTTATTGGTGCAGAACAAGGCTCTTTATGAGGATAAGGATCAGTTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAAGATTTAAAAAGTCAAGCTGCTCTTATTCAAGATGATGACATACCTAATGTAGATGAGCCACAAAAGGATAAGAAGGAAAAAGTCAGATCGGATGACTTCAGGGATTCTGCAGAGACGTTATCATCTGTAACAGCTAATCATTCAGATGATGCACCCAATCAGAACAAGGAGGATGGATTTAATAATCTTCAGGATTTGGAGGGTTCGCTTGCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGATGTTTTGATATGTGTGAGGATGACGTTAATAACAACAGTCCAAGAGATCTGGATCATGATTATGGAAATGAAAGTTCTGGGCCAAGTTCTTCCTTACAACAAAACACCAACAATCAGCAAAAAAAGTTTCCAAGTGGTTCTTTGCTACCTGATAATTTTCTTTTTCCCAAAAAGGTTGTCACTGACGGGGACAGGGATTACCTACAAACAAAGTATGCTTCGGAGAGGAATCACAGTGGGCCATTGCAATATCGACAGAAGAGAGATACCAACAACCTTCCATTGGTTGATGACACATCAGATGGAGCGTTTGTCCAGCGCAGGGGGCGGTTTAAGGTCACATCGGCTGATCTCAGTCCAATGGGTCCTTCAAACAATGCTTCTGGCCCAGTTGTTAGTCCTACCAGCCCACCAAATCAAAATTTCATGGCTGGCGCTATTCTTCCATCGCTTCAGTGCATCTTGCAACAGAATGGTTTGCAAAGGGAAGAGATTATAAAATTAATAAAGTATGCAGAGCAATCTTCTGGTAAGAATGCAGAATCCGTAGAGGCAGGGGCAGTTGATAGTTTGCAGGTACCTGCAACAACCAGGGAGAAGGAGCTGCATTTTCAGGTGGTTCAACTCCAACAGAGCATTGGAAGCCTTGTTGAGGAATTACAAAGACAAAAGATGAAAAATGTTCAGTTAGAGAAACAATTGAGCAGTATGATTAACAAAATGGAGAAGTGA 2007 0.4111 MEHVLEKRFPLNAEDYKLYEEVGEGVSASVYRALCVPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLQAHCSFTTGHNLWVVMPYMAGGSCLHIMKSAYPEGFEEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAFKELVATCLVKDPKKRPSSEKLLKHHFFRHARASKYLARTILDGLAPLGDRFRSLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNVDEPQKDKKEKVRSDDFRDSAETLSSVTANHSDDAPNQNKEDGFNNLQDLEGSLASFPSKPLQALKGCFDMCEDDVNNNSPRDLDHDYGNESSGPSSSLQQNTNNQQKKFPSGSLLPDNFLFPKKVVTDGDRDYLQTKYASERNHSGPLQYRQKRDTNNLPLVDDTSDGAFVQRRGRFKVTSADLSPMGPSNNASGPVVSPTSPPNQNFMAGAILPSLQCILQQNGLQREEIIKLIKYAEQSSGKNAESVEAGAVDSLQVPATTREKELHFQVVQLQQSIGSLVEELQRQKMKNVQLEKQLSSMINKMEK 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6301g00001 668 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Vium6301g00001 668 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Vium6301g00001 668 MobiDBLite consensus disorder prediction 496 526 - -
Vium6301g00001 668 MobiDBLite consensus disorder prediction 357 378 - -
Vium6301g00001 668 Coils Coil 638 668 - -
Vium6301g00001 668 Gene3D Transferase(Phosphotransferase) domain 1 97 315 - -
Vium6301g00001 668 MobiDBLite consensus disorder prediction 437 474 - -
Vium6301g00001 668 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6301g00001 668 SUPERFAMILY Protein kinase-like (PK-like) 13 301 IPR011009 -
Vium6301g00001 668 MobiDBLite consensus disorder prediction 448 471 - -
Vium6301g00001 668 MobiDBLite consensus disorder prediction 498 522 - -
Vium6301g00001 668 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6301g00001 668 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 7 649 IPR047173 GO:0043539
Vium6301g00001 668 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6301g00001 668 MobiDBLite consensus disorder prediction 543 560 - -
Vium6301g00001 668 MobiDBLite consensus disorder prediction 379 404 - -
Vium6301g00001 668 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Vium6301g00001 668 MobiDBLite consensus disorder prediction 539 560 - -
Vium6301g00001 668 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Vium6301g00001 668 MobiDBLite consensus disorder prediction 352 404 - -
Vium6301g00001 668 CDD STKc_OSR1_SPAK 14 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6301g00001 Vium-Chr6301 952 16072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6301g00001 1 665 MAP Kinase Kinase Kinase Kinase AT5G14720 65.939 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vium6301g00001 Pkinase 2.9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6301g00001 K08835 - gmx:100784402 1220.3