LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6301g00001	ATGGAGCATGTTTTGGAAAAAAGATTCCCTCTTAATGCAGAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGCGTTAGTGCCTCTGTATACAGGGCTCTTTGTGTTCCTCTCAACGAGATAGTTGCAATCAAGGTTCTGGATCTAGAGAAGTGCAATAATGATTTGGATGGAATTCGAAGAGAGGTACAGACGATGAGCTTGATTGATCATCCAAATGTTTTACAGGCACATTGCTCTTTTACTACTGGACACAATCTATGGGTTGTAATGCCATACATGGCAGGGGGTTCTTGCCTCCATATAATGAAATCTGCCTATCCAGAAGGTTTTGAAGAGCCAGTTATTGCTACTTTATTGCATGAAGTTCTCAAAGCTCTTGTTTATCTTCATGCCCATGGTCACATACATAGAGATGTTAAGGCGGGGAATATTCTGCTTGATTCTAATGGTGCTGTCAAACTAGCTGATTTTGGAGTGTCAGCATGTATGTTTGATACTGGAGACAGGCAACGTTCAAGGAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCCGAAGTCATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCTATGAAAGTTTTGCTTATGACTTTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGGCTTTCAAGGAGTTGGTTGCCACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCCAGTTCAGAAAAGCTATTAAAGCACCACTTCTTTAGACATGCACGTGCTAGCAAATATCTTGCTCGCACCATTCTAGATGGGCTTGCTCCTTTAGGAGATCGTTTTAGATCGCTAAAGGCAAAAGAGGCAGATTTATTGGTGCAGAACAAGGCTCTTTATGAGGATAAGGATCAGTTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAAGATTTAAAAAGTCAAGCTGCTCTTATTCAAGATGATGACATACCTAATGTAGATGAGCCACAAAAGGATAAGAAGGAAAAAGTCAGATCGGATGACTTCAGGGATTCTGCAGAGACGTTATCATCTGTAACAGCTAATCATTCAGATGATGCACCCAATCAGAACAAGGAGGATGGATTTAATAATCTTCAGGATTTGGAGGGTTCGCTTGCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGATGTTTTGATATGTGTGAGGATGACGTTAATAACAACAGTCCAAGAGATCTGGATCATGATTATGGAAATGAAAGTTCTGGGCCAAGTTCTTCCTTACAACAAAACACCAACAATCAGCAAAAAAAGTTTCCAAGTGGTTCTTTGCTACCTGATAATTTTCTTTTTCCCAAAAAGGTTGTCACTGACGGGGACAGGGATTACCTACAAACAAAGTATGCTTCGGAGAGGAATCACAGTGGGCCATTGCAATATCGACAGAAGAGAGATACCAACAACCTTCCATTGGTTGATGACACATCAGATGGAGCGTTTGTCCAGCGCAGGGGGCGGTTTAAGGTCACATCGGCTGATCTCAGTCCAATGGGTCCTTCAAACAATGCTTCTGGCCCAGTTGTTAGTCCTACCAGCCCACCAAATCAAAATTTCATGGCTGGCGCTATTCTTCCATCGCTTCAGTGCATCTTGCAACAGAATGGTTTGCAAAGGGAAGAGATTATAAAATTAATAAAGTATGCAGAGCAATCTTCTGGTAAGAATGCAGAATCCGTAGAGGCAGGGGCAGTTGATAGTTTGCAGGTACCTGCAACAACCAGGGAGAAGGAGCTGCATTTTCAGGTGGTTCAACTCCAACAGAGCATTGGAAGCCTTGTTGAGGAATTACAAAGACAAAAGATGAAAAATGTTCAGTTAGAGAAACAATTGAGCAGTATGATTAACAAAATGGAGAAGTGA	2007	0.4111	MEHVLEKRFPLNAEDYKLYEEVGEGVSASVYRALCVPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLQAHCSFTTGHNLWVVMPYMAGGSCLHIMKSAYPEGFEEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAFKELVATCLVKDPKKRPSSEKLLKHHFFRHARASKYLARTILDGLAPLGDRFRSLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNVDEPQKDKKEKVRSDDFRDSAETLSSVTANHSDDAPNQNKEDGFNNLQDLEGSLASFPSKPLQALKGCFDMCEDDVNNNSPRDLDHDYGNESSGPSSSLQQNTNNQQKKFPSGSLLPDNFLFPKKVVTDGDRDYLQTKYASERNHSGPLQYRQKRDTNNLPLVDDTSDGAFVQRRGRFKVTSADLSPMGPSNNASGPVVSPTSPPNQNFMAGAILPSLQCILQQNGLQREEIIKLIKYAEQSSGKNAESVEAGAVDSLQVPATTREKELHFQVVQLQQSIGSLVEELQRQKMKNVQLEKQLSSMINKMEK	668

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium6301g00001	668	FunFam	Serine/threonine-protein kinase BLUS1	5	93	-	-
Vium6301g00001	668	FunFam	serine/threonine-protein kinase BLUS1 isoform X1	97	330	-	-
Vium6301g00001	668	MobiDBLite	consensus disorder prediction	496	526	-	-
Vium6301g00001	668	MobiDBLite	consensus disorder prediction	357	378	-	-
Vium6301g00001	668	Coils	Coil	638	668	-	-
Vium6301g00001	668	Gene3D	Transferase(Phosphotransferase) domain 1	97	315	-	-
Vium6301g00001	668	MobiDBLite	consensus disorder prediction	437	474	-	-
Vium6301g00001	668	Pfam	Protein kinase domain	16	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium6301g00001	668	SUPERFAMILY	Protein kinase-like (PK-like)	13	301	IPR011009	-
Vium6301g00001	668	MobiDBLite	consensus disorder prediction	448	471	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6301g00001	Vium-Chr6301	952	16072	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6301g00001	1	665	MAP Kinase Kinase Kinase Kinase	AT5G14720	65.939	0.0	914

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Vium6301g00001		Pkinase	2.9e-59	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6301g00001	K08835		-	gmx:100784402	1220.3

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