Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6297g00008 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATCGACGATGACGAAGAATTCCCAATTCCCGTCTCAAAGAAACCCTCAATGCAAAACGACGAGATCATGGAACTGTTGTGGCAAAACGGCCAGGTTGTGATGCAGAGCCAAAACCATCGACCACTCAGAAAACCGCCGCATACGTTGGTTGCCGGCGGAGTCTCTCCGGCTAGGGAGATTCGATCCTCTGAAGCAGAAAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCACGAAGATCCTCCTCCCTTTGATCACCACGATTTCAGCGCCGACATGCTGAACCCGCCGCCGACAAACGTAATCGCGAGCGTGACTCACAGTAGCGCCGCCGTACAATCCTCCTTTCGCACGACGGAGCTTCGACATCCTGCTCCTCGTCCGCCGATTCCTCCTTCTCGGCGGCCGGTGCCGGCGGCAAACAGTATGCAGAATTTCTCACACTTCTCGAATCACGGCAATTCGTCGTCGAGTTCCAAGGCCACGGCGGCGCAACCGACGGTGGTGGATTCGTGCCAGACGCCGGTCGCGACGGCAGAGCACGCTGAAACCGGTCGCGCTAGCGTGACCGCCGCCGATGCAGGTAAGGCGGCGGAGTCTGGAGGAAGGGAGACGGCGACGTGCGATGTGACGGTGACGTCGTCTCCTGGTGGTTCAAGCGGGAGCGCGGAACCAGTTCAGAGGGAACTTGACCGAAAGAGGAAGGGGAGAGAACCGGAGGAATCAGAGTTTCTGAGCGAGGATGTAGATTTTGAATCTCCGGAAGCTAAAAAACAAGGGCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGTAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAGCAGTATTTGCCGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCGGTAATGCCATTTCCCAATATGTTAACTAGTTCAACTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCGAGGTTTCCCCCTGTGCCTCCTTTCCATATTCCCCATGTTCCTGCCCCTGATTCATCCAGAATGCCAGCACCAAATCTGTCAAATAATAGTATGCTTAACGCACTTGGTACGCAAGGTCCAGATCAATCACGTATCCCAAACTACACTGATCCTTATCAGCAATACGTCGGCCTCCAACAGGTGCAGTTACAATTAATGCAGGCAATGAACCAACCAAATGTGAGCAAGCCCAGTACCAGTAGGGGTCAAGAGAATCCAGAAAAACATCAGTCAGGTAAATTGCCATTCTAG 1521 0.5108 MNHCVPDFEIQIDDDEEFPIPVSKKPSMQNDEIMELLWQNGQVVMQSQNHRPLRKPPHTLVAGGVSPAREIRSSEAENYGNQHLFMQEDEMASWLHYPIHEDPPPFDHHDFSADMLNPPPTNVIASVTHSSAAVQSSFRTTELRHPAPRPPIPPSRRPVPAANSMQNFSHFSNHGNSSSSSKATAAQPTVVDSCQTPVATAEHAETGRASVTAADAGKAAESGGRETATCDVTVTSSPGGSSGSAEPVQRELDRKRKGREPEESEFLSEDVDFESPEAKKQGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYLPPMGMGIGMGMGMEMGMNRPVMPFPNMLTSSTLPAATAAAHLGPRFPPVPPFHIPHVPAPDSSRMPAPNLSNNSMLNALGTQGPDQSRIPNYTDPYQQYVGLQQVQLQLMQAMNQPNVSKPSTSRGQENPEKHQSGKLPF 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6297g00008 506 CDD bHLH_AtPIF_like 292 355 IPR047265 -
Vium6297g00008 506 Coils Coil 298 318 - -
Vium6297g00008 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983
Vium6297g00008 506 SMART finulus 298 347 IPR011598 GO:0046983
Vium6297g00008 506 MobiDBLite consensus disorder prediction 477 506 - -
Vium6297g00008 506 Gene3D - 287 350 IPR036638 GO:0046983
Vium6297g00008 506 MobiDBLite consensus disorder prediction 160 200 - -
Vium6297g00008 506 MobiDBLite consensus disorder prediction 431 459 - -
Vium6297g00008 506 MobiDBLite consensus disorder prediction 248 264 - -
Vium6297g00008 506 MobiDBLite consensus disorder prediction 228 244 - -
Vium6297g00008 506 MobiDBLite consensus disorder prediction 477 491 - -
Vium6297g00008 506 MobiDBLite consensus disorder prediction 131 304 - -
Vium6297g00008 506 Pfam Helix-loop-helix DNA-binding domain 296 342 IPR011598 GO:0046983
Vium6297g00008 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 370 IPR036638 GO:0046983
Vium6297g00008 506 PANTHER TRANSCRIPTION FACTOR PIF3 22 173 IPR044273 GO:0003700|GO:0006355
Vium6297g00008 506 MobiDBLite consensus disorder prediction 424 459 - -
Vium6297g00008 506 FunFam Basic helix-loop-helix transcription factor 287 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6297g00008 Vium-Chr6297 10248 15580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6297g00008 1 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.223 3.99e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6297g00008 HLH 6.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6297g00008 - - gmx:100788491 674.855