Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6297g00006 ATGCTTGAACTCAACAGAAGCAAAATGAATCACTGTGTTCCAGATTTCGAAATCCAAATCGACGATGACGAAGAATTCCCAATTCCCGTCTCAAAGAAACCCTCAATGCAAAACGACGAGATCATGGAACTGTTGTGGCAAAACGGCCAGGTTGTGATGCAGAGCCAAAACCATCGACCACTCAGAAAACCGCCGCATACGTTGGTTGCCGGCGGAGTCTCTCCGGCTAGGGAGATTCGATCCTCTGAAGCAGAAAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCACGAAGATCCTCCTCCCTTTGATCACCACGATTTCAGCGCCGACATGCTGAACCCGCCGCCGACAAACGTAATCGCGAGCGTGACTCACAGTAGCGCCGCCGTACAATCCTCCTTTCGCACGACGGAGCTTCGACATCCTGCTCCTCGTCCGCCGATTCCTCCTTCTCGGCGGCCGGTGCCGGCGGCAAACAGTATGCAGAATTTCTCACACTTCTCGAATCACGGCAATTCGTCGTCGAGTTCCAAGGCCACGGCGGCGCAACCGACGGTGGTGGATTCGTGCCAGACGCCGGTCGCGACGGCAGAGCACGCTGAAACCGGTCGCGCTAGCGTGACCGCCGCCGATGCAGGTAAGGCGGCGGAGTCTGGAGGAAGGGAGACGGCGACGTGCGATGTGACGGTGACGTCGTCTCCTGGTGGTTCAAGCGGGAGCGCGGAACCAGTTCAGAGGGAACTTGACCGAAAGAGGAAGGGGAGAGAACCGGAGGAATCAGAGTTTCTGAGCGAGGATGTAGATTTTGAATCTCCGGAAGCTAAAAAACAAGGGCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGTAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAGCAGTATTTGCCGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCGGTAATGCCATTTCCCAATATGTTAACTAGTTCAACTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCGAGGTTTCCCCCTGTGCCTCCTTTCCATATTCCCCATGTTCCTGCCCCTGATTCATCCAGAATGCCAGCACCAAATCTGTCAAATAATAGTATGCTTAACGCACTTGGTACGCAAGGTCCAGATCAATCACGTATCCCAAACTACACTGATCCTTATCAGCAATACGTCGGCCTCCAACAGGTGCAGTTACAATTAATGCAGGCAATGAACCAACCAAATGTGAGCAAGCCCAGTACCAGTAGGGGTCAAGAGAATCCAGAAAAACATCAGTCAGAAGAAACATGA 1539 0.5088 MLELNRSKMNHCVPDFEIQIDDDEEFPIPVSKKPSMQNDEIMELLWQNGQVVMQSQNHRPLRKPPHTLVAGGVSPAREIRSSEAENYGNQHLFMQEDEMASWLHYPIHEDPPPFDHHDFSADMLNPPPTNVIASVTHSSAAVQSSFRTTELRHPAPRPPIPPSRRPVPAANSMQNFSHFSNHGNSSSSSKATAAQPTVVDSCQTPVATAEHAETGRASVTAADAGKAAESGGRETATCDVTVTSSPGGSSGSAEPVQRELDRKRKGREPEESEFLSEDVDFESPEAKKQGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYLPPMGMGIGMGMGMEMGMNRPVMPFPNMLTSSTLPAATAAAHLGPRFPPVPPFHIPHVPAPDSSRMPAPNLSNNSMLNALGTQGPDQSRIPNYTDPYQQYVGLQQVQLQLMQAMNQPNVSKPSTSRGQENPEKHQSEET 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6297g00006 512 MobiDBLite consensus disorder prediction 485 512 - -
Vium6297g00006 512 CDD bHLH_AtPIF_like 300 363 IPR047265 -
Vium6297g00006 512 Coils Coil 306 326 - -
Vium6297g00006 512 MobiDBLite consensus disorder prediction 439 467 - -
Vium6297g00006 512 MobiDBLite consensus disorder prediction 168 208 - -
Vium6297g00006 512 FunFam Basic helix-loop-helix transcription factor 295 358 - -
Vium6297g00006 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Vium6297g00006 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 378 IPR036638 GO:0046983
Vium6297g00006 512 SMART finulus 306 355 IPR011598 GO:0046983
Vium6297g00006 512 MobiDBLite consensus disorder prediction 256 272 - -
Vium6297g00006 512 MobiDBLite consensus disorder prediction 236 252 - -
Vium6297g00006 512 Gene3D - 295 358 IPR036638 GO:0046983
Vium6297g00006 512 PANTHER TRANSCRIPTION FACTOR PIF3 30 181 IPR044273 GO:0003700|GO:0006355
Vium6297g00006 512 MobiDBLite consensus disorder prediction 139 312 - -
Vium6297g00006 512 MobiDBLite consensus disorder prediction 485 499 - -
Vium6297g00006 512 MobiDBLite consensus disorder prediction 432 467 - -
Vium6297g00006 512 Pfam Helix-loop-helix DNA-binding domain 304 350 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6297g00006 Vium-Chr6297 9523 15579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6297g00006 9 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.223 4.32e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6297g00006 HLH 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6297g00006 - - gmx:100788491 679.478