Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6296g00024 ATGTCTGAGGCTGCTAAAGACTCAGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCACGCCACAACGAGGTTTCTGCTAATGGTTCTTCTTCTGAACCTGCTCCTCCTCAAGATTATTCTCACCATCACAGTCCTCCTTCGTCTTCATCTTTTCCACGTGAAGTGACCTCCACAACGAACCATGAACCTGATGAGAGTGATAAGGAACCATCAAGGAAAGAACTCACCTCAACACAAGATGACGAAGTCTTGCATGAAGAACTGAAATCTCCAACATCTTCATGCAATCTCGAGAACCCCAAGACACCCTCAACGGAAATAGAAACTTCCTTAACGAAATCACCTAAAAAGGGAGACCAAAGCGACACGACAAGCGCATCAGAGGACAAAACTCCAAAGAAACCAGACAAGATCCTTCCATGCCCTCGTTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTATAACGTGAATCAGCCACGCCACTTCTGCAAGCACTGCCAGAGATACTGGACTGCAGGAGGAACCATGAGGAATGTGCCAGTTGGTGCAGGTCGCCGCAAGAACAAAAACTCTTCTTCTGCTGCATCTCATTATCGTCAAATCATGGTTCCTGAAACCCTTCAGAACGGATCATTGCACAGTGCTGTGTTGACCTTTGGATCAGATTTCCCTCTCTGTGACTCCATGGCTTCTGTGTTGAACCTTGCTGAGAAAACACAAAACGGTGTCCTCAACGGGTTTCATTCACCTAAGCATAATGCTAGCACTGTTAATAATAACAAGACTGGTGATGATATTAAGTCAGTTGGTGCTTCTGTTATGGCTTCATCTTTGTGTGAGAAGAGAGACAATGCTACTAGCTCTCATGAAGAATCAGTGGATAAGATTTATCATCAAGGTTTCAGTCCTCAATTGTGCCTCACAGGTTCTTCTTCATCATCATCTTCTCCTTGGCCTTATCCATGGAACCCTGCAATGGCTTCTTCTGCTTTTTACCAACCTGTGTCCTTCTACCCCACACCAGCATTCTGGAGATGCATGCCACCACCATCTTGGAGTTTAAATTACCAATCTGCCCCTTGCTCTGGTCCAAACTCACCAACCTTGGGGAAACATTCAAGAGAAGGGGACATCTTGTTCCAAAAGCCTGGCACTGAAAGCAGCAGCAACATGGCAGAAAATAACAACACTGTGTTGATCCCCAAGACGCTGAGAATTGATGACCCTACAGAAGCTGCAAAGAGCTCGATATGGTCAACACTAGGGATCGAAAAGGAGAAGGGTAACTCTCTGAATGGAGGAGGGCTTTTCAAGGCATTTGCATCAAAGGGGGGCAGTGATGACAAGAAGAACCATGTGGTGGTTGAAGCATCCCCAGTGTTGCAAGCCAACCCTGCAGCTTTGTCAAGGTCTCTTGTATTCCATGAGAGAACATAG 1449 0.4589 MSEAAKDSAIKLFGRTISLPRHNEVSANGSSSEPAPPQDYSHHHSPPSSSSFPREVTSTTNHEPDESDKEPSRKELTSTQDDEVLHEELKSPTSSCNLENPKTPSTEIETSLTKSPKKGDQSDTTSASEDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSSSAASHYRQIMVPETLQNGSLHSAVLTFGSDFPLCDSMASVLNLAEKTQNGVLNGFHSPKHNASTVNNNKTGDDIKSVGASVMASSLCEKRDNATSSHEESVDKIYHQGFSPQLCLTGSSSSSSSPWPYPWNPAMASSAFYQPVSFYPTPAFWRCMPPPSWSLNYQSAPCSGPNSPTLGKHSREGDILFQKPGTESSSNMAENNNTVLIPKTLRIDDPTEAAKSSIWSTLGIEKEKGNSLNGGGLFKAFASKGGSDDKKNHVVVEASPVLQANPAALSRSLVFHERT 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6296g00024 482 MobiDBLite consensus disorder prediction 1 138 - -
Vium6296g00024 482 MobiDBLite consensus disorder prediction 21 58 - -
Vium6296g00024 482 ProSiteProfiles Zinc finger Dof-type profile. 140 194 IPR003851 GO:0003677|GO:0006355
Vium6296g00024 482 MobiDBLite consensus disorder prediction 59 89 - -
Vium6296g00024 482 MobiDBLite consensus disorder prediction 90 122 - -
Vium6296g00024 482 ProSitePatterns Zinc finger Dof-type signature. 142 178 IPR003851 GO:0003677|GO:0006355
Vium6296g00024 482 Pfam Dof domain, zinc finger 137 194 IPR003851 GO:0003677|GO:0006355
Vium6296g00024 482 PANTHER CYCLIC DOF FACTOR 2 1 482 IPR045174 GO:0003700|GO:0006355
Vium6296g00024 482 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6296g00024 Vium-Chr6296 203067 206696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6296g00024 1 481 C2C2-Dof Transcription Factor Family AT3G47500 40.954 3.37e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium6296g00024 zf-Dof 4.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6296g00024 - - gmx:100775201 680.248