Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6296g00023 ATGGATCTACAAAACATGCAAAATCAGAGCATGCATTTTGTGTTGTCCACTGATGCCAAACCAAGGCTGAAGTGGACTCCTGAACTTCACCAACGGTTCATTGAGGCCACAAATCAGCTTGGAGGTGCAGATAAAGCAACTCCAAAGAGTCTTATGAGGGTGTTGGGGATTCCAGGACTTACTTTGTACCACCTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGATACCAGCTCTGACAGCAAACAAGAAGATTACATAGAAACCAAGAGCAGTGATGGCCATTGCAGCAGGGAAATCAGTCTTGGGGCCCAGAATCAAATTACTGAAAACATGCAGATAGCTCAGGCCCTCCAAATGCAAATGGAAGTACAAAGGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGAAGCTCCGAATTGAAGCTCAAGGGAAATACTTGCAATCAGTGCTAAAGAAGGCACAGGAAGCACTTGCTGGATACAATTCTGCCCCAGTGGGGATAGAGCTCACAAAAGCTGAACTTTCCCAGCTTGTCACCATCATCAACAATGCTTGTCCAAGCTCTCCCATCTCAGAACTAACAGAGACAAGAGGGTTGAGTTTAAGCTGTGGGGACAGGAAAAGAGACAGAGGCACTATGTGTTCACTGGAAAGTTCCTTAACATCTTCTGAAAGCTCTGGGAGAAAGGAAGAGAAACAGTCAATGGAAGAGATAGAGGAGTTCAAAAGCTCCAATAATGCTTCAGTTGAATTGCCGTTGATGGGCTTTCACACTGAGAATAAAGCATCCAACACAGGCTCTAGCAATGAGGCTAGTGGGAGAAAGAGAAGTGCAGCAACAAAATCTAATGATGGTAAGTGTGCTGTTGAACAACCATGTGGAAAAAGAAGTGGCAACAAGTTCAGAAAACCAGAAATGCTTGACTTGAACAGCCAATGCCAGATTGACATCGACTCAACAACTTCAAAAACATTAGACTTAAATTGCAGCTTAAACTTTTGGGAACCATGA 1035 0.4309 MDLQNMQNQSMHFVLSTDAKPRLKWTPELHQRFIEATNQLGGADKATPKSLMRVLGIPGLTLYHLKSHLQKYRLGKSQQLDTSSDSKQEDYIETKSSDGHCSREISLGAQNQITENMQIAQALQMQMEVQRKLYEQIEVQKHLKLRIEAQGKYLQSVLKKAQEALAGYNSAPVGIELTKAELSQLVTIINNACPSSPISELTETRGLSLSCGDRKRDRGTMCSLESSLTSSESSGRKEEKQSMEEIEEFKSSNNASVELPLMGFHTENKASNTGSSNEASGRKRSAATKSNDGKCAVEQPCGKRSGNKFRKPEMLDLNSQCQIDIDSTTSKTLDLNCSLNFWEP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6296g00023 344 MobiDBLite consensus disorder prediction 232 247 - -
Vium6296g00023 344 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Vium6296g00023 344 Coils Coil 120 140 - -
Vium6296g00023 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Vium6296g00023 344 MobiDBLite consensus disorder prediction 266 310 - -
Vium6296g00023 344 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Vium6296g00023 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Vium6296g00023 344 Gene3D - 19 77 - -
Vium6296g00023 344 Pfam MYB-CC type transfactor, LHEQLE motif 117 163 IPR025756 -
Vium6296g00023 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 267 IPR044848 GO:0003700
Vium6296g00023 344 MobiDBLite consensus disorder prediction 266 286 - -
Vium6296g00023 344 MobiDBLite consensus disorder prediction 219 252 - -
Vium6296g00023 344 FunFam Two-component response regulator 16 79 - -
Vium6296g00023 344 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6296g00023 Vium-Chr6296 169912 172366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6296g00023 11 305 G2-like Transcription Factor Family AT1G69580 49.511 5.62e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium6296g00023 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6296g00023 - - gmx:100787178 582.022