Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6296g00022 ATGGATCTACAAAACATGCAAAATCAGAGCATGCATTTTGTGTTGTCCACTGATGCCAAACCAAGGCTGAAGTGGACTCCTGAACTTCACCAACGGTTCATTGAGGCCACAAATCAGCTTGGAGGTGCAGATACAACTCCAAAGAGTCTTATGAGGGTGTTGGGGATTCCAGGACTTACTTTGTACCACCTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGATACCAGCTCTGACAGCAAACAAGAAGATTACATAGAAACCAAGAGCAGTGATGGCCATTGCAGCAGGGAAATCAGTCTTGGGGCCCAGAATCAAATTACTGAAAACATGCAGATAGCTCAGGCCCTCCAAATGCAAATGGAAGTACAAAGGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGAAGCTCCGAATTGAAGCTCAAGGGAAATACTTGCAATCAGTGCTAAAGAAGGCACAGGAAGCACTTGCTGGATACAATTCTGCCCCAGTGGGGATAGAGCTCACAAAAGCTGAACTTTCCCAGCTTGTCACCATCATCAACAATGCTTGTCCAAGCTCTCCCATCTCAGAACTAACAGAGACAAGAGGGTTGAGTTTAAGCTGTGGGGACAGGAAAAGAGACAGAGGCACTATGTGTTCACTGGAAAGTTCCTTAACATCTTCTGAAAGCTCTGGGAGAAAGGAAGAGAAACAGTCAATGGAAGAGATAGAGGAGTTCAAAAGCTCCAATAATGCTTCAGTTGAATTGCCGTTGATGGGCTTTCACACTGAGAATAAAGCATCCAACACAGGCTCTAGCAATGAGGCTAGTGGGAGAAAGAGAAGTGCAGCAACAAAATCTAATGATGGTAAGTGTGCTGTTGAACAACCATGTGGAAAAAGAAGTGGCAACAAGTTCAGAAAACCAGAAATGCTTGACTTGAACAGCCAATGCCAGATTGACATCGACTCAACAACTTCAAAAACATTAGACTTAAATTGCAGCTTAAACTTTTGGGAACCATGA 1032 0.4312 MDLQNMQNQSMHFVLSTDAKPRLKWTPELHQRFIEATNQLGGADTTPKSLMRVLGIPGLTLYHLKSHLQKYRLGKSQQLDTSSDSKQEDYIETKSSDGHCSREISLGAQNQITENMQIAQALQMQMEVQRKLYEQIEVQKHLKLRIEAQGKYLQSVLKKAQEALAGYNSAPVGIELTKAELSQLVTIINNACPSSPISELTETRGLSLSCGDRKRDRGTMCSLESSLTSSESSGRKEEKQSMEEIEEFKSSNNASVELPLMGFHTENKASNTGSSNEASGRKRSAATKSNDGKCAVEQPCGKRSGNKFRKPEMLDLNSQCQIDIDSTTSKTLDLNCSLNFWEP 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6296g00022 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 266 IPR044848 GO:0003700
Vium6296g00022 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 76 IPR017930 -
Vium6296g00022 343 Pfam MYB-CC type transfactor, LHEQLE motif 116 162 IPR025756 -
Vium6296g00022 343 MobiDBLite consensus disorder prediction 231 246 - -
Vium6296g00022 343 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Vium6296g00022 343 Coils Coil 119 139 - -
Vium6296g00022 343 MobiDBLite consensus disorder prediction 265 309 - -
Vium6296g00022 343 SUPERFAMILY Homeodomain-like 19 74 IPR009057 -
Vium6296g00022 343 Gene3D - 17 77 - -
Vium6296g00022 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 74 IPR006447 GO:0003677
Vium6296g00022 343 FunFam Two-component response regulator 16 78 - -
Vium6296g00022 343 MobiDBLite consensus disorder prediction 75 98 - -
Vium6296g00022 343 MobiDBLite consensus disorder prediction 265 285 - -
Vium6296g00022 343 MobiDBLite consensus disorder prediction 218 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6296g00022 Vium-Chr6296 169912 172373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6296g00022 11 304 G2-like Transcription Factor Family AT1G69580 48.860 1.06e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium6296g00022 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6296g00022 - - gmx:100787178 573.933