Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6296g00020 ATGGCTTCAGGAACTGAGGTGCCGGAGAATTCTGTTTTCGAGAGGTTCGACCGAAACAGAGACATAACTCTGTTTCTTCCCTTTCTCTTTGGCCTCTCGGAGGCCGCCCCAGGAAGAGATGGCGACGACCCACGTCACGAAAACGGGAACACTGAAGGCCCCCAGCGTCAAAGAATCATCTTGGTGAACCCCTTCACTCAGGGCATGGTTGTCATCGACGCCGACTCGCGCCTCGAAGCTCTGTTTCGCGAACTCGGCAGCGGAAAAGGTGGTCGGCCTCCGGCTTCCAAAGAATCCATTGAGGCCATGCCAAGTGTGGAAGTTGGAGAGGGTGAAGATTTGGAGTGCGTGGTTTGTTTGGAGGAGTTTGAGGTTGGTGTGGTGGCGAAGGAGATGCCGTGTAAGCACAAGTTTCATGGTGATTGTATTGAGAAGTGGTTGGGGCTTCATGGGTCTTGCCCTGTGTGTAGGTATGAGATGCCCGTGGAGAAGAATTGCGTGATGAAGAGCGAGGAAGAAGGGGGAGAGAGGAGAAGGGACGGTGGTGATGAAGTTTGGGTTAGTTTTTCTTACAATAGGATTAGGAGAGGCCAGGATCATGATCAAGCTGCTTCTTCAAATGATGATTCTCGATCAAGTCCTGAAGATGCTGCTGCAGAGAGTTAG 666 0.5195 MASGTEVPENSVFERFDRNRDITLFLPFLFGLSEAAPGRDGDDPRHENGNTEGPQRQRIILVNPFTQGMVVIDADSRLEALFRELGSGKGGRPPASKESIEAMPSVEVGEGEDLECVVCLEEFEVGVVAKEMPCKHKFHGDCIEKWLGLHGSCPVCRYEMPVEKNCVMKSEEEGGERRRDGGDEVWVSFSYNRIRRGQDHDQAASSNDDSRSSPEDAAAES 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6296g00020 221 FunFam E3 ubiquitin-protein ligase RNF181 84 163 - -
Vium6296g00020 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 161 - -
Vium6296g00020 221 MobiDBLite consensus disorder prediction 197 221 - -
Vium6296g00020 221 SMART ring_2 116 156 IPR001841 -
Vium6296g00020 221 SUPERFAMILY RING/U-box 103 163 - -
Vium6296g00020 221 Pfam Ring finger domain 115 157 IPR001841 -
Vium6296g00020 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 163 IPR013083 -
Vium6296g00020 221 MobiDBLite consensus disorder prediction 35 57 - -
Vium6296g00020 221 MobiDBLite consensus disorder prediction 38 52 - -
Vium6296g00020 221 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6296g00020 Vium-Chr6296 163402 164467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6296g00020 4 209 C3H Transcription Factor Family AT1G26800 52.657 2.42e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6296g00020 - - gmx:100819587 278.87