Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6296g00009 ATGCGCCGATCGACGGCCCGTACTCGTGCCGGTTCGAATCGCAACGACGAAATGGATCCGATCAAAACACGCTCTACCAACCTCTTCGCTCGCAACCCTAAGTCCGCGCCATCGCGTTCCCTCTCTTCCGTCCTCCTCCTCATTCTCGCGCTCTCGTTCCTCTTCCTCCTCTCCTACTGCGCGTTCTCCCACTCTGAAAGTAGTTTCCGGTACCGGATCATCGTCGACGGCGGGAGCACCGGCACCCGCGTGCACGTGTTTAAGTACCGGTCGGTCAGGGCATTGCATTTCGGGAAGGAGGGTTTGGCCTCGATGCGCGTTAACCCGGGGCTGTCGGCGTTCTCGGAGGATCCGGATGGGGCGGGCGGGTCGGTATCGGAGCTGGTGGAATTCGCGAAAGGGCGGATCCCGAGGGTTTGTTGGGGGGAGACGGAGATTCGGTTGATGGCAACGGCAGGGTTGAGAATGCTGGACGCGGAGGTGCAGGAAAGGATTCTGGAATCGTGTAGGAAGGTTTTACGTAACTCTGGGTTCAAGTTTATGGACCATTGGGCTTCTGTTATAACAGGTTCTGATGAAGGAGTTTATGCTTGGATTGTTGCTAATTATGCACTTGGCACTCTTGGAGGTGATCCTTTGGATACAACTGGGATTGTTGAACTTGGTGGTGCTTCTGCTCAGGTGACCTTTGTATCAAGAGAACCGGTGCTCCCTTCTTTCTCAAGAACTGTTAAATTTGGGAACATCACTTACAAGCTTTACAGCCGCAGCTTTCTTCATTTTGGCCTGAATGCTGCTCATGACTCATGGAAAGAAGGACTTGTATCAGGAAAATTCGGTTTGGCTTCTCAATCTCCTCAAGAAAGGTTGCAGATAGATCCTTGTACTCCTACTGGGTACTCTTACAGTGCTGAGTCATTGAAGTTGCCTCCTAGCTCAGAGATTGAAAAGGTCCGTTATCTTTCCACTGTCCAAACTATGGGGAACTTCTCAGCATGCAGAACGGCAGCACTTATGTTGCTACAAAAAGGGAAAGAATCATGCTCCCATCAACATTGTGACATGGGATCAACTTTCATACCATATCTTCGGGGGAATTTTCTGGCCACAGAAAATTTCTATCACACATCAAAGTTTTTTGGATTGCGGCCAAAGGCCTATCTGTCCAAGTTGATTAATGCTGGGCAAGAATTCTGTGGAGAGGATTGGTTAAGACTGAAGGAAAAATATGTTTCCCATAATGAGGAAGATTTACTTCGGTATTGCTTCTCTTCAGCATATATTGTTGCTCTGCTTCACGACAGTCTTGGAATTGCTTTGGATGATGAGAGGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGGAGCTTTTATTCTGCAAACAACAGCTGATGCAGATATACAGAACCATACCTGGATTGCCACCATTTTCAGTGATGAATCGCCTACTCTCCTCTCAATTATTGGATTTTTATTAGTGTTGTTAACGGCATGGTCTATATCTAGGTGGAGGAAAACTCAGTTGAAGACAATATATGATCTAGAAAAAGGACGATATATAATCACGCGCATTGGTAGATAA 1599 0.4778 MRRSTARTRAGSNRNDEMDPIKTRSTNLFARNPKSAPSRSLSSVLLLILALSFLFLLSYCAFSHSESSFRYRIIVDGGSTGTRVHVFKYRSVRALHFGKEGLASMRVNPGLSAFSEDPDGAGGSVSELVEFAKGRIPRVCWGETEIRLMATAGLRMLDAEVQERILESCRKVLRNSGFKFMDHWASVITGSDEGVYAWIVANYALGTLGGDPLDTTGIVELGGASAQVTFVSREPVLPSFSRTVKFGNITYKLYSRSFLHFGLNAAHDSWKEGLVSGKFGLASQSPQERLQIDPCTPTGYSYSAESLKLPPSSEIEKVRYLSTVQTMGNFSACRTAALMLLQKGKESCSHQHCDMGSTFIPYLRGNFLATENFYHTSKFFGLRPKAYLSKLINAGQEFCGEDWLRLKEKYVSHNEEDLLRYCFSSAYIVALLHDSLGIALDDERVKVANQVGSIPLDWALGAFILQTTADADIQNHTWIATIFSDESPTLLSIIGFLLVLLTAWSISRWRKTQLKTIYDLEKGRYIITRIGR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6296g00009 532 MobiDBLite consensus disorder prediction 1 37 - -
Vium6296g00009 532 CDD NBD_sugar-kinase_HSP70_actin 73 249 - -
Vium6296g00009 532 Pfam GDA1/CD39 (nucleoside phosphatase) family 66 469 IPR000407 GO:0016787
Vium6296g00009 532 Gene3D - 70 464 - -
Vium6296g00009 532 Gene3D Exopolyphosphatase. Domain 2 189 452 - -
Vium6296g00009 532 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 42 472 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6296g00009 Vium-Chr6296 85890 91751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6296g00009 39 467 Nodulin-like Gene Family AT4G19180 25.319 5.42e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6296g00009 K01510 - gmx:100807287 830.091