Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6296g00008 ATGCGCCGATCGACGGCCCGTACTCGTGCCGGTTCGAATCGCAACGACGAAATGGATCCGATCAAAACACGCTCTACCAACCTCTTCGCTCGCAACCCTAAGTCCGCGCCATCGCGTTCCCTCTCTTCCGTCCTCCTCCTCATTCTCGCGCTCTCGTTCCTCTTCCTCCTCTCCTACTGCGCGTTCTCCCACTCTGAAAGTAGTTTCCGGTACCGGATCATCGTCGACGGCGGGAGCACCGGCACCCGCGTGCACGTGTTTAAGTACCGGTCGGTCAGGGCATTGCATTTCGGGAAGGAGGGTTTGGCCTCGATGCGCGTTAACCCGGGGCTGTCGGCGTTCTCGGAGGATCCGGATGGGGCGGGCGGGTCGGTATCGGAGCTGGTGGAATTCGCGAAAGGGCGGATCCCGAGGGTTTGTTGGGGGGAGACGGAGATTCGGTTGATGGCAACGGCAGGGTTGAGAATGCTGGACGCGGAGGTGCAGGAAAGGATTCTGGAATCGTGTAGGAAGGTTTTACGTAACTCTGGGTTCAAGTTTATGGACCATTGGGCTTCTGTTATAACAGGTTCTGATGAAGGAGTTTATGCTTGGATTGTTGCTAATTATGCACTTGGCACTCTTGGAGGTGATCCTTTGGATACAACTGGGATTGTTGAACTTGGTGGTGCTTCTGCTCAGGTGACCTTTGTATCAAGAGAACCGGTGCTCCCTTCTTTCTCAAGAACTGTTAAATTTGGGAACATCACTTACAAGCTTTACAGCCGCAGCTTTCTTCATTTTGGCCTGAATGCTGCTCATGACTCATGGAAAGAAGGACTTGTATCAGGAAAATTCGGTTTGGCTTCTCAATCTCCTCAAGAAAGGTTGCAGATAGATCCTTGTACTCCTACTGGGTACTCTTACAGTGCTGAGTCATTGAAGTTGCCTCCTAGCTCAGAGATTGAAAAGGTCCGTTATCTTTCCACTGTCCAAACTATGGGGAACTTCTCAGCATGCAGAACGGCAGCACTTATGTTGCTACAAAAAGGGAAAGAATCATGCTCCCATCAACATTGTGACATGGGATCAACTTTCATACCATATCTTCGGGGGAATTTTCTGGCCACAGAAAATTTCTATCACACATCAAAGTTTTTTGGATTGCGGCCAAAGGCCTATCTGTCCAAGTTGATTAATGCTGGGCAAGAATTCTGTGGAGAGGATTGGTTAAGACTGAAGGAAAAATATGTTTCCCATAATGAGGAAGATTTACTTCGGTATTGCTTCTCTTCAGCATATATTGTTGCTCTGCTTCACGACAGTCTTGGAATTGCTTTGGATGATGAGAGGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGGAGCTTTTATTCTGCAAACAACAGCTGATGCAGATATACAGAACCATACCTGGATTGCCACCATTTTCAGTGGAGGAAAACTCAGTTGA 1470 0.4891 MRRSTARTRAGSNRNDEMDPIKTRSTNLFARNPKSAPSRSLSSVLLLILALSFLFLLSYCAFSHSESSFRYRIIVDGGSTGTRVHVFKYRSVRALHFGKEGLASMRVNPGLSAFSEDPDGAGGSVSELVEFAKGRIPRVCWGETEIRLMATAGLRMLDAEVQERILESCRKVLRNSGFKFMDHWASVITGSDEGVYAWIVANYALGTLGGDPLDTTGIVELGGASAQVTFVSREPVLPSFSRTVKFGNITYKLYSRSFLHFGLNAAHDSWKEGLVSGKFGLASQSPQERLQIDPCTPTGYSYSAESLKLPPSSEIEKVRYLSTVQTMGNFSACRTAALMLLQKGKESCSHQHCDMGSTFIPYLRGNFLATENFYHTSKFFGLRPKAYLSKLINAGQEFCGEDWLRLKEKYVSHNEEDLLRYCFSSAYIVALLHDSLGIALDDERVKVANQVGSIPLDWALGAFILQTTADADIQNHTWIATIFSGGKLS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6296g00008 489 MobiDBLite consensus disorder prediction 1 37 - -
Vium6296g00008 489 CDD NBD_sugar-kinase_HSP70_actin 73 249 - -
Vium6296g00008 489 Gene3D - 70 464 - -
Vium6296g00008 489 Pfam GDA1/CD39 (nucleoside phosphatase) family 66 469 IPR000407 GO:0016787
Vium6296g00008 489 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 42 472 IPR000407 GO:0016787
Vium6296g00008 489 Gene3D Exopolyphosphatase. Domain 2 189 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6296g00008 Vium-Chr6296 85890 91753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6296g00008 39 467 Nodulin-like Gene Family AT4G19180 25.319 1.96e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6296g00008 K01510 - gmx:100807287 751.125