Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6296g00007 ATGTTGAATGTTGACGTGAATGGGAACAACAAAAGGAAGAGGTGTGGGAGGGTTTTCAGGTTCAAGAACTTTGCTGAACCTGGTTACCCTGTCATCTTTGGTGGCCCATTTTGTCAGAATGTGAATGCATTGCTTCAATATGCAAATTTTGAGACTCATTTAAGCATGCCAATGTGGTCTTTTCAACTCGAAGTTCATCATCACCCTCCTTTGCATATCTTGCTGTTTGTGATTGAAGAGCCAACAGAAGCACTGCTCAATCGTCATTGCAAGCATTGTCAATACGTTGGCTGGGGAAACCATTTGATCTGCAACAAGAAGTATCACTTTGTGTTACCCTCAAAGGAAGCACTTGGTAGCTGCAGGAACTGTGAAGGGTGCTGTGATGGAACTGCTACAGTTAACAATGGTAAGTCCAAATTAATTGAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGATTGGAAATGGGTTCTAATTTGGCTGGAAACCAGATCATGGACTTTTGGAACCGTTTGTGCAAGGGATTGCAAGCAAGGAAGGTGAGTTTGAATGACATTTCACAGAAGAAAGGAATGGAACTGAGACTTGTAAATGGAATAGCAAACAGTGAGTCATGGTTCAGTCGATGGGGTTACAAATATGGCAGAGGAAGCTTTGGTGTAACTGAATCAATGTACCAGAAAGCCATAGAAGCAATAAGAAGCATGCCACTGTACTTGATCACACATCACATAACCAATTCCAACCACGCCATTCCACTCATCTTCTCAAGATATCAAACACTTTCAGATCAGTCCCTTGTTACCCTCGGTGACCTATTTTCTTACATGTTAGACCTCAAATCACGTCTTCCTCCAGAAACTTCCATTGCCTCTTACACCACAACTGCCTTGCTTGAGACCAATTGCCGTTGGTCCCCTAAGAGGATTGAGATGGCAACAAGGGTCATTGTTGAAGCCTTGAAAAAAACTGAGTTCAGATGGGTTTCAAGGCAACAAGTTAGAGATGCTGCTCGTGCATACATTGGAGACACAGGTCTGCTAGATTTTGTGTTGAAGTCCTTAGGAAACCATGTTGTTGGAAACTACTTGGTCCGTAGAAGCTTGAACCCTGTGACCAAAGTCTTAGAATATTGCTTGGAAGACATTTCTAAGGTTTACACTTGTAATGAAAGTCTGGTAATGAGCAACAAGTACAAGATCACACGAACTCAACTCATGAAAGACATGCTTTATCTGTACAAGTACATTCTCATAGACCCTAAACCTATAATGGGGTCGGAGTTTCTCTCAGCTATACCATTAGCAGCAAGGATAATTCTTGACACCAAGTATTTTATAAGAGATTACTGGGAAGATTTTTCTCACCAAGTTCACCTGGGTTCGGATGAAAAACTCAACCTTTACTGCACAGTTTTTGTGAGGAATGATGGTGATGGTGATGAGTACCTAAACAAGGCCTTTATGCCACCCCATGAATGTCTCACACTGAAAAGAAATGCTACTGTGAGTGAGTTGAAGCTGGAGGTTGAAAGAAGGTTTAGAGAAATTTACTGGGGTTTGAGGAGTTTTGTGGTGGAATCTGTTCAGGATTTGAGTGTGAATAATGGAAGTGAAATGGTTTTTGGAGTAACGAAAGTGGGTGAAAAGATGGTGCTTCAAGGTCGTAACAGCAACATGAAAGAAAACATTATCATGGAGCAAATGTGTGAACGTGATCCAAACAGTGGTACAGTGGATTGTAGTTGTGGAACCATGGAAGATGATGGTGAAAGAATGGTGTCTTGTGATATTTGTGAAATTTGGCAACATACTAGATGTCTTCGAATTCCAAATGACCAAGACATTCCTCATATTTTTCTATGCAAAAAATGTGAACAAGAAATTGTTTTGCTTCCTTCTTTGCCATGA 1950 0.4097 MLNVDVNGNNKRKRCGRVFRFKNFAEPGYPVIFGGPFCQNVNALLQYANFETHLSMPMWSFQLEVHHHPPLHILLFVIEEPTEALLNRHCKHCQYVGWGNHLICNKKYHFVLPSKEALGSCRNCEGCCDGTATVNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMDFWNRLCKGLQARKVSLNDISQKKGMELRLVNGIANSESWFSRWGYKYGRGSFGVTESMYQKAIEAIRSMPLYLITHHITNSNHAIPLIFSRYQTLSDQSLVTLGDLFSYMLDLKSRLPPETSIASYTTTALLETNCRWSPKRIEMATRVIVEALKKTEFRWVSRQQVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISKVYTCNESLVMSNKYKITRTQLMKDMLYLYKYILIDPKPIMGSEFLSAIPLAARIILDTKYFIRDYWEDFSHQVHLGSDEKLNLYCTVFVRNDGDGDEYLNKAFMPPHECLTLKRNATVSELKLEVERRFREIYWGLRSFVVESVQDLSVNNGSEMVFGVTKVGEKMVLQGRNSNMKENIIMEQMCERDPNSGTVDCSCGTMEDDGERMVSCDICEIWQHTRCLRIPNDQDIPHIFLCKKCEQEIVLLPSLP 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6296g00007 649 SMART PHD_3 593 639 IPR001965 -
Vium6296g00007 649 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 643 - -
Vium6296g00007 649 SUPERFAMILY FYVE/PHD zinc finger 586 641 IPR011011 -
Vium6296g00007 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 578 642 IPR013083 -
Vium6296g00007 649 ProSitePatterns Zinc finger PHD-type signature. 594 638 IPR019786 -
Vium6296g00007 649 CDD PHD_MMD1_like 593 638 - -
Vium6296g00007 649 Pfam PHD-finger 594 640 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6296g00007 Vium-Chr6296 81695 84180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6296g00007 11 649 PHD Transcription Factor Family AT5G22260 50.375 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium6296g00007 PHD 3.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6296g00007 K26271 - gmx:100780210 1113.6