Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6296g00005 ATGAGCGATCACTTGGTGCTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGACCCGGTGGCACAGCCGGCGCAGCTTCCCTCCGAGCCCTCTCCGCCTCCCGCTGCCGCGGATGCCACCACAGCCGTCGCCGGGAGTTCCGGCACCGCTCCGGCGGAGGATCGCGTCGAGGAGGGAGGTGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAATTTGGAAACGCCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTTCAGCATTGGTGTGATGAGAAAGGAGACATTACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCACCACCTCCTCGTCCTAACCCTGAAGAAACTACCATTGATATAGGAGGTGGCTGGACAATATCTGGCACACCTTTGGACTTGCGTGATCCTCGGCTCTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAATGCCAGTGGGGCTGCATTCTGCCGCTCAGCTGCTTTAATTTTAATGGCTCTTCTCCTCTTGCGGCATGCACTTTCTGTCTCGGATAGTGATTCTTCTGACGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCGGCTGGATTTTTATTACCTTGCTACATTATGGCCTGGGCAATCAGTATTCTGCAGCGTCGACGACAGAGACAACAGGAAGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTGCAATCTGGGCAGCGTAGAGGTCTACAGTTCGCAATAGCACCAGGACCAGCCACGGTACACCAGGAACAAGTGTAA 879 0.5415 MSDHLVLFVDRLARPVPVDPVAQPAQLPSEPSPPPAAADATTAVAGSSGTAPAEDRVEEGGDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDSDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQQEAAALAATQVAFVLQSGQRRGLQFAIAPGPATVHQEQV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6296g00005 292 SMART ringv_2 72 119 IPR011016 GO:0008270
Vium6296g00005 292 MobiDBLite consensus disorder prediction 21 35 - -
Vium6296g00005 292 Pfam RING-variant domain 73 118 IPR011016 GO:0008270
Vium6296g00005 292 FunFam RING/FYVE/PHD zinc finger protein 61 129 - -
Vium6296g00005 292 ProSiteProfiles Zinc finger RING-CH-type profile. 65 125 IPR011016 GO:0008270
Vium6296g00005 292 MobiDBLite consensus disorder prediction 18 64 - -
Vium6296g00005 292 Coils Coil 161 181 - -
Vium6296g00005 292 CDD RING_CH-C4HC3_MARCH 73 119 - -
Vium6296g00005 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 128 IPR013083 -
Vium6296g00005 292 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 254 IPR033275 -
Vium6296g00005 292 Pfam Protein of unknown function (DUF3675) 124 243 IPR022143 -
Vium6296g00005 292 SUPERFAMILY RING/U-box 71 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6296g00005 Vium-Chr6296 63634 67798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6296g00005 72 148 C3H Transcription Factor Family AT2G37950 37.079 3.18e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6296g00005 - - gmx:100779674 444.506