Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6296g00003 ATGGACCTCACCAACGACGCCAACGACACAAATTCTCAAACTCAAACCCCCCAACAGCTCACCACCACCACCACCACCAACGGATCCCTCAAGCGCCACCGCCCCACCACCGTTCCTCCTCCCTCACAACCACCGCCCGCGGTGGTTTCCTACAAGGAGTGTCTCAAAAACCACGCTGCCAGTATAGGTGGCCACGCGCTTGATGGATGCGGTGAGTTCATGCCCTCCTCTTCCTCCAATCCCACAGAACCCCGCTCGCTAACGTGCGCCGCCTGTGGATGCCACCGTAACTTCCACCGCCGTGACACACATCAGTATCAAAATAATCATTCCAACCCCAGGCCCAATTTCATAAGCTTCTACCACTCACCGCCGCCACCCCATCATGGCCCCGGCCTGTGTACTAGCTCAAGCCCAGGCCCGAGTCCAAGCCCAAGTCCGTTGTCAAGCCCAAGCCCGCCGCCTCTCTCCCACCGTTTCCCAGGTTCGAGACCGGTCCAGGGGCTCTTCGGCCAGGGAAACGAGCATCACCTTACGAGTTTCAATCTTTCCGAGAGCCCCAGTGGAAAGAAGAGGTTCAGGACCAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCAGAATTTCTCTGAGAATTTGGGGTGGAGAATGCAGAAAGGGGATGAAGGGTTGGTGCAAGATTTCTGCAATGAGATTGGCGTTTCAAGAGGGGTCTTCAGGGTGTGGATGCACAACAATAAGAACAGTAGCAGGAAGAGATCGTTGGAGCCTGATGAAAAGATCAATGTCAATGCTTCTGATACTCTTAATAACAATCCATACAGCACCACCGATGACACTCACTGA 843 0.5445 MDLTNDANDTNSQTQTPQQLTTTTTTNGSLKRHRPTTVPPPSQPPPAVVSYKECLKNHAASIGGHALDGCGEFMPSSSSNPTEPRSLTCAACGCHRNFHRRDTHQYQNNHSNPRPNFISFYHSPPPPHHGPGLCTSSSPGPSPSPSPLSSPSPPPLSHRFPGSRPVQGLFGQGNEHHLTSFNLSESPSGKKRFRTKFSQEQKEKMQNFSENLGWRMQKGDEGLVQDFCNEIGVSRGVFRVWMHNNKNSSRKRSLEPDEKINVNASDTLNNNPYSTTDDTH 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6296g00003 280 Pfam ZF-HD protein dimerisation region 49 103 IPR006456 -
Vium6296g00003 280 MobiDBLite consensus disorder prediction 260 280 - -
Vium6296g00003 280 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 248 - -
Vium6296g00003 280 MobiDBLite consensus disorder prediction 246 280 - -
Vium6296g00003 280 FunFam Zinc-finger homeodomain protein 2 178 251 - -
Vium6296g00003 280 MobiDBLite consensus disorder prediction 103 174 - -
Vium6296g00003 280 SUPERFAMILY Homeodomain-like 182 251 IPR009057 -
Vium6296g00003 280 NCBIfam homeobox domain, ZF-HD class 190 247 IPR006455 -
Vium6296g00003 280 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 51 102 IPR006456 -
Vium6296g00003 280 MobiDBLite consensus disorder prediction 1 33 - -
Vium6296g00003 280 MobiDBLite consensus disorder prediction 1 48 - -
Vium6296g00003 280 Gene3D - 179 251 - -
Vium6296g00003 280 MobiDBLite consensus disorder prediction 119 160 - -
Vium6296g00003 280 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 102 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6296g00003 Vium-Chr6296 30130 31521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6296g00003 20 250 ZF-HD Transcription Factor Family AT5G15210 44.841 8.52e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium6296g00003 ZF-HD_dimer 7.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6296g00003 - - gmx:100785050 319.701