Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6289g00014 ATGGAGGGTTGCAAAAACTCCCCTCTAAAGCCATGGAAGAAAGGCCCAACAAGGGGCAAAGGTGGCCCCCAAAATGCCTCCTGTGAGTATAGAGGTGTCAGACAAAGAACATGGGGCAAATGGGTCGCTGAGATAAGAGAGCCTAAGAAGAGATCAAGACTCTGGCTTGGCTCCTTTGCCACAGCAGAAGAAGCTGCTTTCGCCTATGATCAAGCTGCAAGGAGACTCTATGGTCCTGATGCTTACCTCAACCTCCCCCACATGCAACCAAACCTCATCAACTCCACCACCAAATCTCAAAATTTCAAGTGGTTCCCTTCCAACAACTTCATCTCCATGTTCCCCTCACGTGGACTTCTCAACCTCAATGCTCAACCAAGTCTCCATCTCATCCACCAGAGGCTGCAACAGCTCAAGCACAATGGGGTGTCTGCACCAACTCAACCACCACATTCAAAGGTGGTAGAACTTGACAACTTGGTCAACCAAAACCATCCAGAGATTCTCCCTCCACTGCCCCAAGATTCTCAAGCTTCACCACAAAAACAAACAGCTGATTTTGAGGAGAAACCCGAGATAGACCTGCTTGAGTTTCTTCAACAGATGGGAATACTAAAAGATGAAAGAGAGGCAGAGAAAACTGACAGCTCAGGAAGTTCAGCAGTGTCAGAAGCTGCATCACGAGATGAGAGTGAACAACCAGGAGTGTTTTCTGACATGAGTAGTGTTAACTGGGAGGAACTGATTGAGATGCATGACCATGAAGTTGTGTGTAACTATCTTGCATCAGAAGAAATTCTTCAGTTTGAAGCATATGACACAAACGAGGACCTTACTTTCTCCACTTCCATTTGGAACTACTAA 864 0.4653 MEGCKNSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRSRLWLGSFATAEEAAFAYDQAARRLYGPDAYLNLPHMQPNLINSTTKSQNFKWFPSNNFISMFPSRGLLNLNAQPSLHLIHQRLQQLKHNGVSAPTQPPHSKVVELDNLVNQNHPEILPPLPQDSQASPQKQTADFEEKPEIDLLEFLQQMGILKDEREAEKTDSSGSSAVSEAASRDESEQPGVFSDMSSVNWEELIEMHDHEVVCNYLASEEILQFEAYDTNEDLTFSTSIWNY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6289g00014 287 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 249 - -
Vium6289g00014 287 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Vium6289g00014 287 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Vium6289g00014 287 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Vium6289g00014 287 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vium6289g00014 287 MobiDBLite consensus disorder prediction 1 27 - -
Vium6289g00014 287 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Vium6289g00014 287 MobiDBLite consensus disorder prediction 208 237 - -
Vium6289g00014 287 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Vium6289g00014 287 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vium6289g00014 287 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Vium6289g00014 287 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Vium6289g00014 287 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6289g00014 Vium-Chr6289 29318 31130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6289g00014 5 287 AP2-EREBP Transcription Factor Family AT3G57600 52.098 2.66e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium6289g00014 AP2 5.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6289g00014 - - gmx:100808363 407.912