Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6289g00012 ATGAAGCAGATCCCATTATCAAATCTGAAAATGAATGGAGTGAAGCTTTTGAAATCAGATCTTTACCCGTTTATAAATCACAAAAGAGCTGTCACTTCTACATGCCACTTAGAGCAGCTGAGACAAACAATCTTGGAAGGTACTCATCCTCATACTGATTACTTGAAAGAAAGGAGTGGATTATTTCCTCAGAATAACAGTTATTCGGTGATTGTAAATGATGTCAATCGTGACGATCATTCTGCTAAGGAAGCTGGGAACTCCGCCAATACAGAAAACGTGCTAGGAAAAGATAACTCAGTGTCCTTGACTTTAGAGAATGGGAATAAATCTTCAAGAGAACACTTGCTTGATAATAATTCTTCTCCCTCTAAGAGGAGTAGGGTTTACTCAGTTGATGATTATCTTACAAAACACTTTCATGGAAAGCAAGTCTGTGTGAAGGAATGTGGTGATTTCTTTAGAACATCAAAGAGGGTTAAACTTTCTGCATCTACAAGTTTTGAGCCTAGGAAAGAGAAGCCAGATTCTCAACACAGACAGGAAGTGTTGGAACATTTAACTGAAAGAATGCTTCTAGTTTCTGAACAAGGAGATCATCATGTAGAAAATAATAACAAGGAAACTGTGGGTGGTGGGTTCTCAGAGGATATTCCCTATAGATGCATTGTTTCAAAATTGTGCCAACCCAGCAGACATATTGAAGTCCCCCCTGATGAATCAAATATTCCTTTTAATGATGCTTTGATGCTTCAACATACATTTGGTGGTGAAAATTCTCAACAACAGCTGGTTAAGTCAATTCCACAGGAAGCACTTGCAGATGGAATCCAACATGGGATTTCAGGAGGTAAACCCAAGTCTAAACATGAAAAAGATTTACAACTTGAAGATCCAAATGACTCACCGCATCAAATTGCTGGTGTTAAAGCACTTGATCATACTGGGAATGGTTGTAGGGTAGAGGAATCAGGTGATATTGGATATCAAAGTGAAACAAATAGCCTTAAAATGAAGAAGCAGACAGTACAAAATCTTTGTTTAAAGTGTAATGAAGGTGACCAATTACCAATTAGTGATGTAAATGTCGTCCAACCAGTGGTTACTGAATGTTGTCTTGGTATGGAAACTACCATGCCAACAAATGATGCTAATGCAGAAAAAAATCATCAAACAATTAATCTACACCAACCCAAACAGACAGAACCAGATATCGCAGCGTTAAATCTCTCCCAAGAGTCAGTTGCTTGTGATGAAACTATAGTTGGTGTGGTTAATGGTTGTGGAGCAGAGGTGGTTACTGAATGCTGTCTTGGTATGGCAACTACCATGCCAACAAATGATGCTAATGCAGAAAAAAATCAGCAAACAATTAATCTACACCAACCCAAACAGACAGAACCAGATATTGAAGCGTTAAATCTCTCCCAAGAGCCAGTTGCTCGTGATGAAACTATAGTTGGTGTGGTTAATGGTTGTGGAGCAGAGTTATCAAGTGATAGTGATGAGTATCACAAAGAAAAAAAATGTCTTGAAGCAAAAAAGCATGAATTCCTGCACTCCCACTGCACTGTTGATCAAGATTTCTCAGCAATGAATGAACCAAATGAAAAAAATCTTTGCATGAAGTGTAATCAAGGTGGCCAATTATTGGCTTGTAAAACAACTACTTGCCCAATGATGGTGCATGAAAACTGTCTAGGGGCCTCTGCACAATGCAATACAGAGGGCGACTTTTTTTGCCCATTTTGCACATATTCTCGCACTATTTCAGAATATATTGAAGCTAAGAAAGAAGCTTCCTTAGCAAGGAAGGAATTAGCCATCTTTATTAGTAAAGGTAAAACGAGTCGAGCTGCCGATAGTCTTCTTTATGAATTTCGTACACAAGAACATGTTTTTTCAAGAAAGAGTAGTGAGTATGAACATATTCATGTCAAAAACAAAGGAGATGAACAGTTAACAAGGTGTGGAGACAATAGAGAAGATAATGTTGATGAGCATGCAAATGAAGCCAATAATCTTCAGTTTGGAAGAAGTCAGCAACAAGCCCATAATATATCGTGTACCTATTCGTCATTCAGAGAAAAGGAAAATATAAGCAATGGATCAGTTGAATTTTTAAGAGAAGAGAAAATAGGTCAAATGCCAAATGCAAAGAACATAACTGGTGTAAGAGGTGAAGAAAATAAATTGCCAACTGACCATGTAGATGGACTTGTTGGTGACACATGTACTGTTGAAAAAGAAACCCTTGTTAATAAAAGCAATTCTGGATATGAAAGTCCACAAGAAACGGCAAAACATCTAGATACTGATGGAGCAACAGAGTCAGTTTCTGAACATAATACTGGAAAAGAGGAAATGTCTGAAAATGAATGTGAAAAGCATAGTATTTCTAGATACTCCATGAGATACCGTAAACATAAAATGCAATGCAAACCTGAGGCAAGCCCAGCATTTCTCGATAATCAATTAAGACGAAAATATATTCCATGGACAGCTGAAGAGGAAGAGATGATAAGGGAAGGAGTACAGAAGTTTGGTTTCAATGACCCAAAGAAATGGAAAAACATTTTGGCATTTGGTTCTCATGTGTTTGAGAAAGTTGGTAAGCGCCGTACACCACAAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTTCCCCAAAATCAAAATGA 2685 0.378 MKQIPLSNLKMNGVKLLKSDLYPFINHKRAVTSTCHLEQLRQTILEGTHPHTDYLKERSGLFPQNNSYSVIVNDVNRDDHSAKEAGNSANTENVLGKDNSVSLTLENGNKSSREHLLDNNSSPSKRSRVYSVDDYLTKHFHGKQVCVKECGDFFRTSKRVKLSASTSFEPRKEKPDSQHRQEVLEHLTERMLLVSEQGDHHVENNNKETVGGGFSEDIPYRCIVSKLCQPSRHIEVPPDESNIPFNDALMLQHTFGGENSQQQLVKSIPQEALADGIQHGISGGKPKSKHEKDLQLEDPNDSPHQIAGVKALDHTGNGCRVEESGDIGYQSETNSLKMKKQTVQNLCLKCNEGDQLPISDVNVVQPVVTECCLGMETTMPTNDANAEKNHQTINLHQPKQTEPDIAALNLSQESVACDETIVGVVNGCGAEVVTECCLGMATTMPTNDANAEKNQQTINLHQPKQTEPDIEALNLSQEPVARDETIVGVVNGCGAELSSDSDEYHKEKKCLEAKKHEFLHSHCTVDQDFSAMNEPNEKNLCMKCNQGGQLLACKTTTCPMMVHENCLGASAQCNTEGDFFCPFCTYSRTISEYIEAKKEASLARKELAIFISKGKTSRAADSLLYEFRTQEHVFSRKSSEYEHIHVKNKGDEQLTRCGDNREDNVDEHANEANNLQFGRSQQQAHNISCTYSSFREKENISNGSVEFLREEKIGQMPNAKNITGVRGEENKLPTDHVDGLVGDTCTVEKETLVNKSNSGYESPQETAKHLDTDGATESVSEHNTGKEEMSENECEKHSISRYSMRYRKHKMQCKPEASPAFLDNQLRRKYIPWTAEEEEMIREGVQKFGFNDPKKWKNILAFGSHVFEKVGKRRTPQDLKDKWKNMCKASPKSK 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6289g00012 894 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 534 619 IPR013083 -
Vium6289g00012 894 SMART sant 829 889 IPR001005 -
Vium6289g00012 894 MobiDBLite consensus disorder prediction 756 796 - -
Vium6289g00012 894 MobiDBLite consensus disorder prediction 284 299 - -
Vium6289g00012 894 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 379 - -
Vium6289g00012 894 MobiDBLite consensus disorder prediction 277 305 - -
Vium6289g00012 894 ProSitePatterns Zinc finger PHD-type signature. 541 584 IPR019786 -
Vium6289g00012 894 CDD SANT_TRF 831 888 - -
Vium6289g00012 894 ProSiteProfiles Myb-like domain profile. 832 887 IPR001005 -
Vium6289g00012 894 SUPERFAMILY Homeodomain-like 827 888 IPR009057 -
Vium6289g00012 894 SMART PHD_3 540 585 IPR001965 -
Vium6289g00012 894 MobiDBLite consensus disorder prediction 873 894 - -
Vium6289g00012 894 Pfam Myb-like DNA-binding domain 833 893 - -
Vium6289g00012 894 ProSiteProfiles Zinc finger PHD-type profile. 538 587 IPR019787 -
Vium6289g00012 894 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 832 891 IPR017930 -
Vium6289g00012 894 MobiDBLite consensus disorder prediction 766 796 - -
Vium6289g00012 894 MobiDBLite consensus disorder prediction 873 888 - -
Vium6289g00012 894 SUPERFAMILY FYVE/PHD zinc finger 532 587 IPR011011 -
Vium6289g00012 894 Gene3D - 823 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6289g00012 Vium-Chr6289 21849 28552 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium6289g00012 Myb_DNA-bind_6 2.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6289g00012 - - var:108326175 1742.24