Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6289g00002 ATGATATATAGACCAATTCAAACTACACCAAGGTATCCTTGCATTTCACTCCCACACATCTCTCTGAAAAACATCATGGCCGAATCACTTCTTTTCACCTTCGCAGAATCACTCATAGGGAAGCTTGCTTCTGGAGCCGTTCATGAAGCTTCTCTTGCTCTCGGTGTGCAAGCAGATCTTCAACAGATGAAAAAGAGTATGTCACTCATCAAAGCATTCTTGTTAGATGCTGAGCAAAAGAAGCCAAGGAGCAATTCACTGAGTGAATGGCTGATACAGATCAAGCAAGTGTTCTCCGACGCAGAAGACATAGTTGATGATTTTCAGTGTGAAGCGTTGCGGAAGCACGTTGTCAACACTCACGGTGGCCTCACAAGGCAGGTACGTCGTTTTTTCTCAATCAGTAATCCAATCATTTACCGAATCAGAATTGCACATGAGATAAAAGACATCAAAGAGAGGTTGCAGAAAGTTGCAGCTGATGGGAACACGTTCGGCCTTCAAATCATTGACCAAGATACACGTGTCGTGAATGTGACGGATACTACTTATTCCCACGTAAACCCTTCCAATGTTATCGGAAGACAAGATGAAAAACAGGAAATACTAAAGCTTTTACTACAACATGATCATGATGGTCATGACAAAAGTCTCTCAGTTGTTTCCATTCTGGGATTCGGTGGTATGGGAAAGACCACACTGGCAAAGTTGGTGTTCAATGACACCACCATTGACGAGTGTTTCCCATTGAAGATGTGGGTGTGTGTCTCTGGTGATTTTGAGCTTAGGAATGTGCTTATTAAGATCCTCAATTCTGCTCTAAACCCAACTAACGAAAACTTCAAAAACTTTGAGACTGAGCAGCTTCAAAATCGTTTGAGAAATACACTTCAACGCCAGAAGTTCCTGCTTGTGCTGGATGATGTGTGGAACGAGTATCAAGCTAGATGGGATGATTTGAAGGAAATACTAGATGTAGGTGTTGAAGGGTGTAAAATCTTAGTGACAACTCGTAGCCACTTGACAGCTACCATGATGTGCACCAAATCCTCCAACTCTTACCTTCTAGAACGCCTTTCTGAAGATGATTCCTTGTTTTTATTTGTTAAAACGGCTTTTAAAGAAGGGAAAGAAGAAAGATATCCAGAGTTGTTGGAGATCGGGAAGGAAATTGTGATCAAGTGTGGAGGAATACCATTGGCAGTGAAAACTTTAGCGAGTTCACTGTTCTCTGTGGTTGGTAAAAGCAAGTGGGAGGCTATGAGAGACGATAAGATTTGGAATTTGCCACAAAAAGAAAAGGACATTTTGCCTGCTCTTGAGATAAGTTACAATCAACTGCCTTCACATTTGAAACCCTGTTTTGTTTGCTTCTCCCTTTTCTGTGAGGGTTCTGAATTTTTTAGCTTTTATGTTGCTAAGTTGTGGGAGGCACTTGGTTTTCTTCCACCACCAAAGGAAAATGAGACAATGCATGAGGTTGCCATTCAATTTCTGCGTGAGCTGTGGTCAAGATCTTTTCTCACAGATTTCATTGAATTGAGCCATGGTTACAGTTTTAAACTACATGATCTAGTGCATGATCTTGCTATGTATGCTGCCAAAGGTGAGTTTCAGACAATATACCCCCGCAGTTCAAAAATATCTCCCAATGCTCGACATTTGGCATTCAGTGATAATAATCTGCTAGACCAAGCTGTCATTCCCACAGGTCTGAGAACTATAATTTTTCCTGATGAAGCCACCAATGAAGCTTTCTTCAACACATTGGTGTCAAGGTGCAAATACTTGAGGTTTTTGGAACTGAGTAACTCTATATACGAGAGTTTACCTCCTTCCATTGGAAAGTTGAAACACTTAAGATATCTCAGTCTCTTTGGGAATAAAAACCTTAAGGGACTTCCTCGCTCAGTTTGTAACCTGCAAAATTTGGAAACTTTGAACCTTAATCAATGCACAGAGATACAACAATTGCCTAAAGGAATAAGCAAACTTATCAGCCTACGTCAGCTGCATATAACCACAAGGCAACTTCATTTTCCGGACCAAGAAATCTCAACTTTGACTTCTTTAGAGACTCTAACATTCAACTCTTGTGATAATTTGGAGTCATTGTTGAAAGGGATACAACTTTCTAGTCTTAAAAATTTGTCTTTGCATGACTGCGGGAAACTGAAGTCTTTGTCCTCTCATGTCATATCAAATTTAGAGAATTTGGTTATCGAAAATTGTTGTGAGTTGGAATTGTCAATGGGCTTTGGCAACCAAATCCCTGATTTAAGGTTAAAGTCACTTGCTTTCAAAAGTTTGCAACAGTTGGTCACTTTGCCTCAGTGGTTGCAAGGATCTGTGAACAAACTACATTCCTTGGCAATTGCTGACTGCAACAATCTTAAGGAGCTTCCTGAGTGGCTTTCTTCTGCGATTTGTCTCAAACTGCTTGTAATTGAATACTGTTCGTCCCTGCAGTCACTCCCTGATAACCTCAAAAATCTTGAAAATTTAATCATTAATAGCTGTCCTGAATTATGCAAAAGATACCAGCCGTGGGTTGGACAGGATTACCACAAAATATCTCACATCCAAAAAGTTTTTGTTGGTGAATTGGAAGAGTGA 2616 0.4037 MIYRPIQTTPRYPCISLPHISLKNIMAESLLFTFAESLIGKLASGAVHEASLALGVQADLQQMKKSMSLIKAFLLDAEQKKPRSNSLSEWLIQIKQVFSDAEDIVDDFQCEALRKHVVNTHGGLTRQVRRFFSISNPIIYRIRIAHEIKDIKERLQKVAADGNTFGLQIIDQDTRVVNVTDTTYSHVNPSNVIGRQDEKQEILKLLLQHDHDGHDKSLSVVSILGFGGMGKTTLAKLVFNDTTIDECFPLKMWVCVSGDFELRNVLIKILNSALNPTNENFKNFETEQLQNRLRNTLQRQKFLLVLDDVWNEYQARWDDLKEILDVGVEGCKILVTTRSHLTATMMCTKSSNSYLLERLSEDDSLFLFVKTAFKEGKEERYPELLEIGKEIVIKCGGIPLAVKTLASSLFSVVGKSKWEAMRDDKIWNLPQKEKDILPALEISYNQLPSHLKPCFVCFSLFCEGSEFFSFYVAKLWEALGFLPPPKENETMHEVAIQFLRELWSRSFLTDFIELSHGYSFKLHDLVHDLAMYAAKGEFQTIYPRSSKISPNARHLAFSDNNLLDQAVIPTGLRTIIFPDEATNEAFFNTLVSRCKYLRFLELSNSIYESLPPSIGKLKHLRYLSLFGNKNLKGLPRSVCNLQNLETLNLNQCTEIQQLPKGISKLISLRQLHITTRQLHFPDQEISTLTSLETLTFNSCDNLESLLKGIQLSSLKNLSLHDCGKLKSLSSHVISNLENLVIENCCELELSMGFGNQIPDLRLKSLAFKSLQQLVTLPQWLQGSVNKLHSLAIADCNNLKELPEWLSSAICLKLLVIEYCSSLQSLPDNLKNLENLIINSCPELCKRYQPWVGQDYHKISHIQKVFVGELEE 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6289g00002 871 Gene3D - 35 149 - -
Vium6289g00002 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 457 IPR027417 -
Vium6289g00002 871 Gene3D Ribonuclease Inhibitor 709 853 IPR032675 -
Vium6289g00002 871 Gene3D - 438 527 IPR036388 -
Vium6289g00002 871 Gene3D Ribonuclease Inhibitor 528 707 IPR032675 -
Vium6289g00002 871 CDD RX-CC_like 34 159 IPR038005 -
Vium6289g00002 871 PRINTS Disease resistance protein signature 220 235 - -
Vium6289g00002 871 PRINTS Disease resistance protein signature 395 409 - -
Vium6289g00002 871 PRINTS Disease resistance protein signature 296 310 - -
Vium6289g00002 871 PRINTS Disease resistance protein signature 639 655 - -
Vium6289g00002 871 Pfam NB-ARC domain 198 445 IPR002182 GO:0043531
Vium6289g00002 871 PANTHER DISEASE RESISTANCE PROTEIN RP 60 828 IPR044974 GO:0006952
Vium6289g00002 871 FunFam Probable disease resistance protein At1g61300 175 351 - -
Vium6289g00002 871 Pfam Rx N-terminal domain 36 117 IPR041118 -
Vium6289g00002 871 SUPERFAMILY L domain-like 514 851 - -
Vium6289g00002 871 Gene3D - 176 351 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6289g00002 Vium-Chr6289 8148 10850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6289g00002 218 832 WRKY Transcription Factor Family AT5G45050 24.215 1.82e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6289g00002 - - gmx:100780033 1133.24