Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6288g00001 ATGTTTCAAGCAACCCACATTTTGCTCTTCTTCTCCGTTCTGTCCTCGTTTTTACCACATGGAACAGCAGCATTCAACCTCACTCTCCCGGGGCAACATCCAGACCCGGAAGCTGTTGCCACACAAGTTCATAGGAGGGTGAATGCTTCAATGGGAAGAAGGGAAATGCTGAGATTGTCAGAGAAAGATGTGGCATCATGTCTTACAGGTAACCCGATTGATGATTGTTGGAAGTGTGACCCAGATTGGGCCAACAACAGACAGAGACTGGCTGATTGTGGAATTGGGTTTGGGCAGAACGCAAAGGGTGGAAAAGGTGGAGAATTTTACATAGTCACGGATTCATCTGATGAGGACCCTGTGAACCCAAAACCAGGAACACTTAGATATGCAGTGATACGGAATGAACCACTGTGGATCGTGTTCCCCAGTAACATGATGATTAAGCTCTCTCAGGAACTCATTTTCAATAGTTACAAAACCATTGATGGCCGTGGTGCTGATGTGCACATCGTGGGTGGAGGTTGCATCACTCTTCAGTATATTAGCAATGTCATTATTCACAACATTCACATCCACCATTGCCATCCTTCTGGTAATGCTAACGTGCGGTCGAGTCCAGAGCACTACGGGTACCGAACTGAATCAGACGGCGATGGAATCTCAATCTTCTCGTCGCGTGACATTTGGATCGATCACTGCACGCTATCCCGGTGCAAGGATGGCCTGATCGACGCGGTGATGGGTTCGACGGCAATAACGATCTCAAACAACCACTTCTCGCACCACAACGACGTGATGCTCTTAGGCCACAGCGACCACTACCTGCCAGACTCGGCGATGCAAGTGACGATCGCGTTCAACCACTTTGGAGAGAATCTGGTGCAGCGCATGCCGCGTTGCAGACTAGGTTACATTCACGTGGTGAACAACGACTTCACGCGATGGGAGATGTACGCGATCGGGGGAAGTGGGAGGCCTACTATTAACAGCCAGGGGAACCGCTACACTGCGCCGGAGGATCCGTACGCAAAGCAGATTACGAAGAGGCTGGACGCCGGAGAAGGGGAGTGGAGCGGCTGGAATTGGAGGTCGGAAGGGGATGTGATGCTGAACGGCGCGTTTTTCGTGGCCTCAGGAGGTGAGGCCGGCACTGACTACCAAAATGCGTACAGCGTTGAGCCTAAGAACGTGGATCGTATCTCGCTTCTCACCATGTCCGCCGGTGTGCTCGGCGTTGCAAGGGACAATAATCTGGGAATGTGGACGAGAGGAGCCAATGATGGTGGTGTATATTTTTCAGATACAGGCCCAGAATACACGGATGACATGTCCCAGAGTACAATGCCGCTGCCACCTTCACGTATTTTCCCTCTTCTCTCTGCATTTCTTGCTTTCTTGTGCCTCTTATTTCATACAATTACCTTAACAACACTTCTATAG 1443 0.5038 MFQATHILLFFSVLSSFLPHGTAAFNLTLPGQHPDPEAVATQVHRRVNASMGRREMLRLSEKDVASCLTGNPIDDCWKCDPDWANNRQRLADCGIGFGQNAKGGKGGEFYIVTDSSDEDPVNPKPGTLRYAVIRNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFSSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGENLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGRPTINSQGNRYTAPEDPYAKQITKRLDAGEGEWSGWNWRSEGDVMLNGAFFVASGGEAGTDYQNAYSVEPKNVDRISLLTMSAGVLGVARDNNLGMWTRGANDGGVYFSDTGPEYTDDMSQSTMPLPPSRIFPLLSAFLAFLCLLFHTITLTTLL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6288g00001 480 SMART amb_all 145 342 IPR002022 -
Vium6288g00001 480 FunFam Pectate lyase 70 412 - -
Vium6288g00001 480 PANTHER PECTATE LYASE 18-RELATED 31 414 IPR045032 GO:0030570
Vium6288g00001 480 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Vium6288g00001 480 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Vium6288g00001 480 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Vium6288g00001 480 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Vium6288g00001 480 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Vium6288g00001 480 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Vium6288g00001 480 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Vium6288g00001 480 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Vium6288g00001 480 Pfam Pectate lyase 154 324 IPR002022 -
Vium6288g00001 480 Gene3D - 70 412 IPR012334 -
Vium6288g00001 480 SUPERFAMILY Pectin lyase-like 59 393 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6288g00001 Vium-Chr6288 17441 26610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6288g00001 1 479 Polysaccharide Lyase AT3G53190 67.695 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6288g00001 K01728 - gmx:100815062 848.966