Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6286g00004 ATGGCCGGTGCCACAAATTGGCTTACGTTTTCGTTGACTCCCGTGGAAATGCTCAGATCCCCGGACTCTTCCTCTCACTGCATGCTCGATAACTTTTATGCCACCAATGGGTGGACAAATTCCAATGAATTAATGGATTCTGAGAGTGAAAACCAGCCACTGCTGGTGCCGAAAGCGGAAGATTTTTTTGAGAACCAAACTGAGACGCAGCAAGACGATTCTTCGCTGACCCAAATTTATGACCATGGCTCTGCCTCTGTTTACTTCGGCGACCAGCAAGATCTGAACGCGATTCCAGGGTTTCAAGCATTCTCGGGTACCAACTCGAGCTCTGAGTTGGATGACTCGGCCTCAGACAAGACCACTCTGGTTGCACCAGCTGAGTTAGGTGCCCACTCAGGAGAGTCTGGCAAAGGAGCTTTGTCTTTATGTGATGCTGTTGGACATGACAAAGCCATCACTGCGGTGGAGCTTGCTACACCTAAGAAGGTTTCTCATACTATTGGCCAGAGAACTTCCATATACAGAGGGGTCACAAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGACGAGAGGGTCAGGCCAGGAAGGGGCGTCAAGTGTACTTGGGTGGATATGACAAGGAGGAAAAGGCTGCTAGAGCGTATGATTTAGCAGCTATCAAGTACTGGGGACCAACAGCAACCACCAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAACATTCAGGAAAGCAAGAATTCATTGCATCACTGCGAAGGAAAAGTAGTGGGTTTTCAAGGGGAGCTTCCGCATACAGGGGGGTTACGAGGCATCATCAACAGGGTAGATGGCAAGCAAGAATCGGCCGAGTTGCGGGAAACAAGGATCTATATCTGGGAACATTTGCGACTGAAGAGGAAGCAGCTGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGCGCTGTAACAAATTTTGAGATGAGCAGATATGATGTGGAGAATATATTGAATAGCTCTCTTCCAGTAGGTGGGGTAGCAAAACGATTGAAGCTTTCGTCCTCCCCAGAATCGGAGAAGAAAGCTATTGTTACTAATGAACAACAACCTGAGGGCACAAACGAAACTAGCACCATCAATTTCTCTGCCATTCAGCCAGTTGCATCTATACCTTATGATTCTGCGAACGCGTACCCACAAAACCTTTTCCACCAGTTTCATCATTCCAACAGTGGAAGTAGTAGCTCAGTACAAGAGTCTGATGCAATTGTGACCAATGCAACTGCACTGACCATCCTTCCACCACCACCTGCTGTTCCTGGGTTCTTTTTATGGCCTCCTCAGTCCTTTTGA 1374 0.4731 MAGATNWLTFSLTPVEMLRSPDSSSHCMLDNFYATNGWTNSNELMDSESENQPLLVPKAEDFFENQTETQQDDSSLTQIYDHGSASVYFGDQQDLNAIPGFQAFSGTNSSSELDDSASDKTTLVAPAELGAHSGESGKGALSLCDAVGHDKAITAVELATPKKVSHTIGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAAIKYWGPTATTNFPISNYTKELEEMKHSGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGASAVTNFEMSRYDVENILNSSLPVGGVAKRLKLSSSPESEKKAIVTNEQQPEGTNETSTINFSAIQPVASIPYDSANAYPQNLFHQFHHSNSGSSSSVQESDAIVTNATALTILPPPPAVPGFFLWPPQSF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6286g00004 457 CDD AP2 173 242 IPR001471 GO:0003700|GO:0006355
Vium6286g00004 457 Gene3D AP2/ERF domain 276 336 IPR036955 GO:0003700|GO:0006355
Vium6286g00004 457 Gene3D AP2/ERF domain 174 242 IPR036955 GO:0003700|GO:0006355
Vium6286g00004 457 ProSiteProfiles AP2/ERF domain profile. 174 240 IPR001471 GO:0003700|GO:0006355
Vium6286g00004 457 PRINTS Ethylene responsive element binding protein signature 316 336 IPR001471 GO:0003700|GO:0006355
Vium6286g00004 457 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Vium6286g00004 457 SUPERFAMILY DNA-binding domain 275 336 IPR016177 GO:0003677
Vium6286g00004 457 FunFam AP2-like ethylene-responsive transcription factor 275 336 - -
Vium6286g00004 457 Pfam AP2 domain 276 326 IPR001471 GO:0003700|GO:0006355
Vium6286g00004 457 Pfam AP2 domain 174 232 IPR001471 GO:0003700|GO:0006355
Vium6286g00004 457 FunFam AP2-like ethylene-responsive transcription factor ANT 173 242 - -
Vium6286g00004 457 SMART rav1_2 276 340 IPR001471 GO:0003700|GO:0006355
Vium6286g00004 457 SMART rav1_2 174 246 IPR001471 GO:0003700|GO:0006355
Vium6286g00004 457 ProSiteProfiles AP2/ERF domain profile. 276 334 IPR001471 GO:0003700|GO:0006355
Vium6286g00004 457 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 407 - -
Vium6286g00004 457 CDD AP2 275 336 IPR001471 GO:0003700|GO:0006355
Vium6286g00004 457 SUPERFAMILY DNA-binding domain 173 242 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6286g00004 Vium-Chr6286 31606 36767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6286g00004 44 457 AP2-EREBP Transcription Factor Family AT5G10510 50.196 8.59e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium6286g00004 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6286g00004 K09285 - gmx:100814405 570.466