Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6279g00001 ATGTGTTCTGAAAATGGAGATTTCTCTGTGAGTGTGACGAATGAAGAGGTGGTGGCGGCAGTGTTACCAATGCAGGAACATTGGCTTCCACTCTCTAACCTTGACCTGCTTCTACCTCCATTGGATGTAGGAGTATTCTTTTGCTACAAGAACCCTATTATCACATCCACAACCATGGAAGATAGTGCCACCAACAAAATCAGCTTTGGAACCATGGTGGAGTCTTTGAAGAAGGCCTTGGCTCAAACCCTAATCTCTTATTATGTGTTTGCAGGTGAAGTGATCCTCAACAGCATGGGTGAACCTGAAGTTCTCTGTAACAATCGTGGTGTTGATTTTGTTGAAGCTCAGGCAGATGTTGAACTTATGAACCTCAACTTTTACAACCCAGACCAATCTATTGAAGGCAAGTTTGTTCCAAAGAAGAAAAAAGGTGGTATAATTGCTATCCAGGCAACTTCGCTGAAGTGTGGAGGAATAATAGTGGCATGCACATTTGACCATCGCATAGCAGATGCATATTCAACAAACATGTTTCTTGTGTCATGGGCTGCCATGGCCCATCCCACCACCGCCATTCCTGCCGCCACTTCTTGTCATCCATGTTTTCGTCGCTCTCTCCTCAACCCTCGTCGTCTAGGTTTCATTCGCCCTTCTCAGCACCACATGTACACCTCCATCTCCGACCTTCCTCCCGCTTCCGTCACGTACGCTAACGCTCTCCTCAGTCGAATATATTACATCACGGAAGAACAACTCTGCCACATGCAGTCCCACGCCGTCGCGCGCACTAAGCTGGAATGTTTCTCGGCTTTCTTATGGAAGATGGTTGCATGTGTAGCGTCAAGAAACACAGATAGTAAAAAGATTACTATAAAAATGGGCATTGTTGTTGATGGAAGGAAGAGACTGGGCAATGGTAACAAAGAGAGTGAAGTGGTGATGATGGAGTGTTACTTTGGGAACGTGCTTTCCATACCCTTTGGAGGGATACTAGTTGAGGAGTTGGTGAAGGAGCCGTTAGGGTATGTGGTGGAGGCTGTTCACGAGTTTTTGTCTATCGCCACAAAGGAGCACTTCTTGGAACTAATTGATTGGGTGGAGGCTCAGAGGCCGATTCCTGGAGTGTCCAGAATTTATTGTAATCGTGCCGACGAGGGACCAGCCTTTGTAGTGTCGTCCGGTCAGAGGTTTCCAGAGAAGAAGGTGGATTTTGGGTGGGGGAAAGCGGTGTTTGCATCGTACCATTTTCCTTGGGGTGGTGAAACTGGTTATGTTATGCCAATGCCAAGTCCTTTGGGGAATGGTGATTGGGTTGTGTACATGTACCTTGCAAAGAAGCACTTGGACATCATAGAGACTGAAGCTGCTCATGTGTTTAAGCCCTTGACTTGGGACTACCTTAACCAATAA 1413 0.4657 MCSENGDFSVSVTNEEVVAAVLPMQEHWLPLSNLDLLLPPLDVGVFFCYKNPIITSTTMEDSATNKISFGTMVESLKKALAQTLISYYVFAGEVILNSMGEPEVLCNNRGVDFVEAQADVELMNLNFYNPDQSIEGKFVPKKKKGGIIAIQATSLKCGGIIVACTFDHRIADAYSTNMFLVSWAAMAHPTTAIPAATSCHPCFRRSLLNPRRLGFIRPSQHHMYTSISDLPPASVTYANALLSRIYYITEEQLCHMQSHAVARTKLECFSAFLWKMVACVASRNTDSKKITIKMGIVVDGRKRLGNGNKESEVVMMECYFGNVLSIPFGGILVEELVKEPLGYVVEAVHEFLSIATKEHFLELIDWVEAQRPIPGVSRIYCNRADEGPAFVVSSGQRFPEKKVDFGWGKAVFASYHFPWGGETGYVMPMPSPLGNGDWVVYMYLAKKHLDIIETEAAHVFKPLTWDYLNQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6279g00001 470 Gene3D - 226 454 IPR023213 -
Vium6279g00001 470 Pfam Transferase family 9 457 - -
Vium6279g00001 470 Gene3D - 7 225 IPR023213 -
Vium6279g00001 470 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 22 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6279g00001 Vium-Chr6279 12590 17908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6279g00001 32 453 Monolignol Biosynthesis Gene Families AT5G48930 24.490 5.53e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6279g00001 - - gmx:100785067 696.041