Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6272g00009 ATGAGTTTCCGAGAGGGAAAGTTAGGAGAAGAGAAGGAATGTGAAGAATCGGTGTTGGGGAGCACTGAATCCAAATCAGTGAGGGAAAATGGATCATTGGCAGCCACACAGTTTACAATTGATGAGAATTTATTGGTTGACCCTAAACTACTCTTTATAGGGTCCAAGATTGGTGAAGGAGCTCATGGGAAAGTATATGAAGGAAGGTACAGAGATCAAATTGTGGCAATCAAAGTTCTGCATCGTGGGAGCACTTCTGAAGAAAGAGTTTCCCTTGAAAATCGTTTTGCTCGAGAAGTTAATATGATGTCTCGTGTCCACCACGACAATCTTGTTAAGTTTATTGGAGCATGTAAGGATCCACTTATGGTAATAGTCACAGAGCTATTACCAGGGATGTCACTGCGTAAATATTTAATGAGTATCCGTCCTGAACGATTAGACCTTCATTTGGCTATCAACTTTGCTCTTGATATTGCTCGAGCATTGGATTGGCTACATGCTAATGGGATCATACACAGAGATCTAAAACCTGACAATCTGTTGCTTACAGCGGACCAGAAGTCTGTTAAACTTGCTGATTTTGGCCTCGCAAGAGAAGAAACTGTGACTGAAATGATGACTGCAGAAACAGGAACTTACCGTTGGATGGCACCAGAGCTGTACAGTACTGTGACTTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTATATAGCTTTGGAGTTGTTCTATGGGAGCTACTAACAAACCGCATGCCATTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCGAGCATACCAGGTGATATATCCCCTGAGCTTGCTTTTGTGATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCGAGTTTTAGTCAGATCATTCGCATGCTCAATGCATTTCTCTTCACTCTCTCACCACCATCTCCTCCTTTGCCAGTACCTAACAATGAACCTGAGGTGGCTACAACCAGCAATGGCACCATTACTGAGTTCTCTGCCCGAAACAAAGGAAGGTTTGGCTTTCTTCGCCAATTGTTTTCTTCAAAGAGGACCAAAAACTAA 1107 0.4291 MSFREGKLGEEKECEESVLGSTESKSVRENGSLAATQFTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRYRDQIVAIKVLHRGSTSEERVSLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPERLDLHLAINFALDIARALDWLHANGIIHRDLKPDNLLLTADQKSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGVVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDISPELAFVIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLPVPNNEPEVATTSNGTITEFSARNKGRFGFLRQLFSSKRTKN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6272g00009 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vium6272g00009 368 MobiDBLite consensus disorder prediction 1 26 - -
Vium6272g00009 368 Gene3D Transferase(Phosphotransferase) domain 1 134 323 - -
Vium6272g00009 368 SMART serkin_6 51 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6272g00009 368 CDD STKc_MAP3K-like 57 312 - -
Vium6272g00009 368 ProSitePatterns Protein kinases ATP-binding region signature. 57 78 IPR017441 GO:0005524
Vium6272g00009 368 MobiDBLite consensus disorder prediction 1 19 - -
Vium6272g00009 368 SUPERFAMILY Protein kinase-like (PK-like) 48 337 IPR011009 -
Vium6272g00009 368 Gene3D Phosphorylase Kinase; domain 1 39 130 - -
Vium6272g00009 368 Pfam Protein tyrosine and serine/threonine kinase 53 312 IPR001245 GO:0004672|GO:0006468
Vium6272g00009 368 ProSiteProfiles Protein kinase domain profile. 51 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6272g00009 368 FunFam Kinase suppressor of Ras 1 40 130 - -
Vium6272g00009 368 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 51 313 - -
Vium6272g00009 368 PRINTS Tyrosine kinase catalytic domain signature 165 183 IPR001245 GO:0004672|GO:0006468
Vium6272g00009 368 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Vium6272g00009 368 PRINTS Tyrosine kinase catalytic domain signature 127 140 IPR001245 GO:0004672|GO:0006468
Vium6272g00009 368 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6272g00009 Vium-Chr6272 86354 90729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6272g00009 39 368 MAP Kinase Kinase Kinase AT5G01850 74.011 0.0 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium6272g00009 PK_Tyr_Ser-Thr 4.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6272g00009 - - qsa:O6P43_016485 584.334