Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6272g00006 ATGAGTTTCCGAGAGGGAAAGTTAGGAGAAGAGAAGGAATGTGAAGAATCGGTGTTGGGGAGCACTGAATCCAAATCAGTGAGGGAAAATGGATCATTGGCAGCCACACAGTTTACAATTGATGAGAATTTATTGGTTGACCCTAAACTACTCTTTATAGGGTCCAAGATTGGTGAAGGAGCTCATGGGAAAGTATATGAAGGAAGGTACAGAGATCAAATTGTGGCAATCAAAGTTCTGCATCGTGGGAGCACTTCTGAAGAAAGAGTTTCCCTTGAAAATCGTTTTGCTCGAGAAGTTAATATGATGTCTCGTGTCCACCACGACAATCTTGTTAAGTTTATTGGAGCATGTAAGGATCCACTTATGGTAATAGTCACAGAGCTATTACCAGGGATGTCACTGCGTAAATATTTAATGAGTATCCGTCCTGAACGATTAGACCTTCATTTGGCTATCAACTTTGCTCTTGATATTGCTCGAGCATTGGATTGGCTACATGCTAATGGGATCATACACAGAGATCTAAAACCTGACAATCTGTTGCTTACAGCGGACCAGAAGTCTGTTAAACTTGCTGATTTTGGCCTCGCAAGAGAAGAAACTGTGACTGAAATGATGACTGCAGAAACAGGAACTTACCGTTGGATGGCACCAGAGCTGTACAGTACTGTGACTTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTATATAGCTTTGGAGTTGTTCTATGGGAGCTACTAACAAACCGCATGCCATTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGATTGCAGCAAGAGAGGCCGAGCATACCAGGTGA 852 0.4261 MSFREGKLGEEKECEESVLGSTESKSVRENGSLAATQFTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRYRDQIVAIKVLHRGSTSEERVSLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPERLDLHLAINFALDIARALDWLHANGIIHRDLKPDNLLLTADQKSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGVVLWELLTNRMPFEGMSNLQAAYAAAFKIAAREAEHTR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6272g00006 283 Pfam Protein kinase domain 55 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6272g00006 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vium6272g00006 283 CDD STKc_MAP3K-like 57 265 - -
Vium6272g00006 283 MobiDBLite consensus disorder prediction 1 26 - -
Vium6272g00006 283 Gene3D Phosphorylase Kinase; domain 1 39 130 - -
Vium6272g00006 283 ProSitePatterns Protein kinases ATP-binding region signature. 57 78 IPR017441 GO:0005524
Vium6272g00006 283 Gene3D Transferase(Phosphotransferase) domain 1 132 283 - -
Vium6272g00006 283 MobiDBLite consensus disorder prediction 1 19 - -
Vium6272g00006 283 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 51 271 - -
Vium6272g00006 283 SUPERFAMILY Protein kinase-like (PK-like) 44 269 IPR011009 -
Vium6272g00006 283 FunFam Kinase suppressor of Ras 1 40 130 - -
Vium6272g00006 283 ProSiteProfiles Protein kinase domain profile. 51 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6272g00006 283 SMART serkin_6 51 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6272g00006 Vium-Chr6272 86341 94886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6272g00006 39 273 MAP Kinase Kinase Kinase AT5G01850 78.764 7.84e-146 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium6272g00006 Pkinase 7.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6272g00006 - - pvu:PHAVU_008G083700g 514.998