Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6272g00003 ATGGAATTGCCTGATACAGTCAGTACAGCCATGTACAAGGGGAGATTCTGCACTAGTGGTGGAGTTAAGTCTCAGCTTGGATATGTTGAAACTGATCCATCTGGTCGATATGGCCGTTTCAGGGATGTTCTTGGCAAAGGAGCAATGAAGACTGTGTATAGGGCATTTGATGAGTTACTGGGGATTGAAGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTCTTTCACTCACCAGAACAACTTCAGCGCCTTTATTCAGAGGTTCATCTCCTGAAGCACCTCAACCATGACTCTATGATGATCTTCTATGGTTCTTGGATCGATGTCAACAACAGAACCTTCAACTTCATCACTGAATTGTTCACCTCCGGTACACTTAGAGAGTACAGGCAAAAGTATAAGCGAGTAGATATCCGAGCAGTTAAGATTTGGGCTCGCCAGATTCTTAGTGGCTTGGAGTATTTACACAGCCATAATCCTCCTGTAATACATAGAGATCTCAAGTGTGACAACATCTTTGTCAATGGCCATCAGGGGAGGGTCAAGATTGGAGACTTAGGCCTAGCAGCTATACTTCGTAGTTCTCAACATGCCCACAGTGTCATAGGCACACCAGAATTCATGGCTCCAGAACTGTATGAAGAGAAATATAACGAGCTGGTAGACATATATTCCTTTGGTATGTGCATGATAGAGTTGCTTACTTTTGAGTTCCCATACAGTGAATGCGCCAATCCAGCTCAAATATACAAGAAAGTTACTTCGGGGAAGCTACCTAATGCGTTTTACAGAATCCCAGATTTGGAAGCCCAGAAGTTTGTGGGAAAATGTTTGTCAAATGTCTCAGATAGACCATCAGCAACGGAGCTCTTGTTGGACCCTTTTTTAGCTGTGGACCAACTTGAAATTCCATTGCCACCAAACATACCATTATTTCCAAATCACACTCTACAGCTTAATTCCGCTCCACTAGTTCCCATTGAGCATCATCATGATCAAACAAAGAGTGCAGAAATGACAATTACTGGTTCAATAAACGAAGAGAACAACACAGTTTTCCTCAAAGTGAGGATCTCTGACATAACAGGGCACACGAGGCATGTGTTCTTCCCATTTGATACATTAAAAGACACGGCTATTCAGGTGGCGATGGAGATGGTGCAAGAACTTGAGATTAGCCACTTGGAACCATTAGAGATTGCTGCAATGATAGATCATGAGGTATCAGCTTTAGTTCCAAGTTGGAGGGACAGGGTTAAGTGTCACCACCAACGACAACACAGCTTTAACTACGAAGAAGATGAAGATATCAATAACCACCACCCCTTCTTCTTATCATCTTCTCCATCATCCCCTCGTGGTTCTGGCCACATGTCTGCTTCCAACTCCTTCAAAACCCATGTTCGCGGCAATCATTACCCTTTTGCTCAAGAAGGGTATCAAGATGACATGTTCATGAACAACGACGACGCAAGCTCTCAAGCCTCGATGAACTCCTTCAAGTGTTCAACCTTCCAATTCTGCGACCCTGGCCACGAAGACGAGCACGACGGAACCGAACGCAACAAGTGCACCACATTATCGTGCTGTGGCGGCGAAGAAGGCGAACCTCGTTTGGCGAACCCGGTTTTGAACCCGCCGCGGATGGAGTGTTCGTGCGGGTGCAGATTTGGGTCGGGTCACGGGTGCCCGAGGCTGACTCGGATCCGGTCGTGCCCGCACGAGCGGCGGAGCTTGCAGCTCCAACGGTCGATGATGTTGGAGGAGATTTACAAGTACAAAAGACGCTTCTTCAACACCATTGGTGCCGTTGAGAACATCGGGTTTCGGCATCCACTAAGAGGTGGTGTGTGCTTTCCTCGTGTGTAG 1869 0.4639 MELPDTVSTAMYKGRFCTSGGVKSQLGYVETDPSGRYGRFRDVLGKGAMKTVYRAFDELLGIEVAWNQVKLGDVFHSPEQLQRLYSEVHLLKHLNHDSMMIFYGSWIDVNNRTFNFITELFTSGTLREYRQKYKRVDIRAVKIWARQILSGLEYLHSHNPPVIHRDLKCDNIFVNGHQGRVKIGDLGLAAILRSSQHAHSVIGTPEFMAPELYEEKYNELVDIYSFGMCMIELLTFEFPYSECANPAQIYKKVTSGKLPNAFYRIPDLEAQKFVGKCLSNVSDRPSATELLLDPFLAVDQLEIPLPPNIPLFPNHTLQLNSAPLVPIEHHHDQTKSAEMTITGSINEENNTVFLKVRISDITGHTRHVFFPFDTLKDTAIQVAMEMVQELEISHLEPLEIAAMIDHEVSALVPSWRDRVKCHHQRQHSFNYEEDEDINNHHPFFLSSSPSSPRGSGHMSASNSFKTHVRGNHYPFAQEGYQDDMFMNNDDASSQASMNSFKCSTFQFCDPGHEDEHDGTERNKCTTLSCCGGEEGEPRLANPVLNPPRMECSCGCRFGSGHGCPRLTRIRSCPHERRSLQLQRSMMLEEIYKYKRRFFNTIGAVENIGFRHPLRGGVCFPRV 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6272g00003 622 SMART serkin_6 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6272g00003 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vium6272g00003 622 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Vium6272g00003 622 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 24 500 - -
Vium6272g00003 622 Gene3D Transferase(Phosphotransferase) domain 1 121 301 - -
Vium6272g00003 622 FunFam probable serine/threonine-protein kinase WNK9 121 301 - -
Vium6272g00003 622 SUPERFAMILY Protein kinase-like (PK-like) 40 297 IPR011009 -
Vium6272g00003 622 CDD STKc_WNK 36 296 - -
Vium6272g00003 622 Pfam Protein kinase domain 42 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6272g00003 622 ProSiteProfiles Protein kinase domain profile. 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6272g00003 622 FunFam Probable serine/threonine-protein kinase WNK1 23 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6272g00003 Vium-Chr6272 4959 9155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6272g00003 19 436 MAP Kinase Kinase Kinase AT3G51630 66.508 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium6272g00003 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6272g00003 K08867 - gmx:100272206 1072