Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6270g00001 ATGGAGATATTATCACAAATGTGGTCTCTGTTAGGGTTACTCACCGTGCTCCAAAACGTTCTCCCATCCCAGCTTCTCTCATTGCTCCATTCCTTATACGAATCTCTGCAAGATCTGCTTTCTCCATATTCCTATTTCGAGATTCCAGAGTTCAACGGCTACTGCGGCGTCGACCTCAACGACCTCTACCGCCACGTGCACCTCTACCTCAATGCCGCAAACCACGCCCCCGGCGCCGCGTGCCGCCGACTAACGCTCTCCCGCTCGCCTTCCTCGAACCGCATCTCCTTCGCCGTCGCCCCGAATCACACCGTCCACGACGCCTTCCGCGGCCAACGCGTCACATGGACGCACCACGTTGAGACCGCGCAGGACTCACTTGAGGAGAAGCGCAGCTTCACACTCCGCCTCCCGAAGCGCCACCGCCACTCGCTCCTCTCTGCCTATATATCCCACGTCACCGCACGCGCCGAGGAGTTCGAGCGCGTCTCGCGAGAGCGTAGACTCTTCACCAACAATACCACCGGGTCGGGCTCCTTCGAATCGGGTTGGGTCTCCGTCCCCTTCCGTCACCCGTCCACCTTCGAGACCCTCGCCCTCGAGCCCGAACTGAAAAGACAAATAAAAAACGACTTAACGGCTTTCGCTGACGGCAAAGAGTTTTACAATCGAGTGGGCCGGGCCTGGAAACGTGGGTATTTACTCCATGGCCCACCCGGGTCGGGTAAATCAAGTTTAATAGCCGCTATGGCAAATTTTCTGTGTTACGACGTTTACGACTTGGAGCTAACCAAAGTCTCTGATAACTCCGAGTTACGGTCGTTACTTATCCAAACGACGAACCGTTCTATTATCGTTATCGAAGACATCGACTGTTCCGTTGACTTAACGGCAGACAGATCAACGAAGAAAACTCAGGCAGCGAAATTGTCGAAGAGAAAGAAGTCTCAGACGGCGTCGTTCACGCGCTGCGAGGAGAGTGGGCGCGTGACGCTTTCGGGGCTTTTGAATTTCACCGACGGGTTATGGTCTTGCTGCGGTGACGAGAGGATTGTGGTGTTCACAACAAACCATAGGGATAGTGTGGACCCCGCGCTCGTGCGGTGTGGCCGCATGGACGTCCACGTCAGCCTCAACACGTGTGGGGTTCACGCGTTCCGCGAGCTCGCGCGAAACTACCTCGGCGTAGATTCGCACGTGCTGTTCGAGGCGGTTGAGGGTTGCATTCGCTCGGGTGGGTCTCTCACGCCCGCACACGTGGGAGAGATTTTGCTGCGGAACAGAGGAGATGCTGACGTGGCGATGAGGGAAGTGCTGGCGGCCATGCAGGGACGGATGCTGGCCGCTGCTGCCGTAGCTGACCAGGCGGAGAACGAGGACACGACGGTTGGAGTGAGGTCGCCGGAGAGCGTGCTGCTGATGGGGTCGCCGGAGAATTGGGATGCTTTGAGCGGAAAGAAGAGGAAGGAACAAAATGGGGGTAATAACAATTGGGATAAAAAGGTCAAGTTTTTCGTTAGGTTAAGGTCGTTGACCAGATCTGACCCTGGTAGATAA 1557 0.5613 MEILSQMWSLLGLLTVLQNVLPSQLLSLLHSLYESLQDLLSPYSYFEIPEFNGYCGVDLNDLYRHVHLYLNAANHAPGAACRRLTLSRSPSSNRISFAVAPNHTVHDAFRGQRVTWTHHVETAQDSLEEKRSFTLRLPKRHRHSLLSAYISHVTARAEEFERVSRERRLFTNNTTGSGSFESGWVSVPFRHPSTFETLALEPELKRQIKNDLTAFADGKEFYNRVGRAWKRGYLLHGPPGSGKSSLIAAMANFLCYDVYDLELTKVSDNSELRSLLIQTTNRSIIVIEDIDCSVDLTADRSTKKTQAAKLSKRKKSQTASFTRCEESGRVTLSGLLNFTDGLWSCCGDERIVVFTTNHRDSVDPALVRCGRMDVHVSLNTCGVHAFRELARNYLGVDSHVLFEAVEGCIRSGGSLTPAHVGEILLRNRGDADVAMREVLAAMQGRMLAAAAVADQAENEDTTVGVRSPESVLLMGSPENWDALSGKKRKEQNGGNNNWDKKVKFFVRLRSLTRSDPGR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6270g00001 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 405 IPR027417 -
Vium6270g00001 518 MobiDBLite consensus disorder prediction 477 498 - -
Vium6270g00001 518 PANTHER BCS1 AAA-TYPE ATPASE 7 443 - -
Vium6270g00001 518 SMART AAA_5 229 380 IPR003593 GO:0016887
Vium6270g00001 518 Gene3D - 185 376 IPR027417 -
Vium6270g00001 518 MobiDBLite consensus disorder prediction 482 498 - -
Vium6270g00001 518 Pfam ATPase family associated with various cellular activities (AAA) 234 377 IPR003959 GO:0005524|GO:0016887
Vium6270g00001 518 Pfam Domain associated at C-terminal with AAA 21 119 IPR025753 -
Vium6270g00001 518 CDD RecA-like_BCS1 208 376 - -
Vium6270g00001 518 Gene3D - 377 450 - -
Vium6270g00001 518 ProSitePatterns AAA-protein family signature. 350 368 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6270g00001 Vium-Chr6270 10335 13549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6270g00001 231 378 Calmodulin-binding Proteins AT3G56690 26.797 5.08e-08 53.9