Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6263g00008 ATGGGATGGTTAAGGTCGTATCTGCCAGTGATGGGTATGGTGTTGAATCAGTTCATTTATGCAGGAGTTAGTCTCAGCACAAGACTTGTTTTCTCCGCAGGAATGAGTCCAAGGGTGTTTGTGGTTTATCGCCATGTTCTTGCAACCATTGTAATTGCTCCATTAGCTTATTTCTCACGCAGAAATTCTGGCTCATATTACTTAAACTTGAAGAGTTTCTCATGGATATTCTTGATCTCCTTCATAGGCATTGTCTTGAATCAAAATTTCTTTTGCGAGGGTTTATACCTGACAAATTCTTCGGTGGCAAGTGCAATGGTGAATCTTGTTCCAGCAGTAACATTTGTGATAGCAACTTGTGCAGGAATGGAGAAAGTGAACATTCGAAGCTGGAGATCTATAGCGAAGATAGTAGGAACAGTGATATGTGTGAGTGGAGCAGTGTCCATAGCTTTGTTAAAGGGTCCAAAGCTTCTAAATGCAGAAAGCCTGCCATCAAAATCCATCACCATGGCTTCATCACAAGCTGATAATTGGTTACTGGGCTGTCTGTTTCTCACTGCATGCTGCTGTTCTTGGTCAATCTGGCTCATTTTGATGGTTCCTGCCTCTAAAAGCCACCCAGATCCCTTGTCCTTTTCAGCTTGGATGTGTTTTATGGCAACTCTGCAGTCAACGTTAGTGGCATTAGTGTTGGAACAAGATCCACTTGCATGGAAGATTAATTCTCTACTTGAATTTGGTTCTGCTATGTATGCAGGAGTTATGGGATCTGCAGTAACATTCTTTATCCAAGCATGGTGCATCTCACTGGCAGGTCCTCTTTTCAGTGCAATGTTCAATCCTCTTATGGCTGTCATTGTCACCATATTGGCTCCTTTATTACTACATGAGCAAGTATACTTTGGAAGCTTGATTGGGTCAATGGCAGTGATAATTGGGTTATATATTGTGCTATGGGGTAAAGCTGAAGAAGTTGTGGTGCTGAATGTTAAGACAGGTTCAGAATCAATGCTTAATCCCACAGAGGAAGTCAAAATATCCATAGCATGTTCTAAAGCCAATTTGGAAGAACCTCTTCTATCTGCTCATTCTCCTTCACATAATTAA 1110 0.4135 MGWLRSYLPVMGMVLNQFIYAGVSLSTRLVFSAGMSPRVFVVYRHVLATIVIAPLAYFSRRNSGSYYLNLKSFSWIFLISFIGIVLNQNFFCEGLYLTNSSVASAMVNLVPAVTFVIATCAGMEKVNIRSWRSIAKIVGTVICVSGAVSIALLKGPKLLNAESLPSKSITMASSQADNWLLGCLFLTACCCSWSIWLILMVPASKSHPDPLSFSAWMCFMATLQSTLVALVLEQDPLAWKINSLLEFGSAMYAGVMGSAVTFFIQAWCISLAGPLFSAMFNPLMAVIVTILAPLLLHEQVYFGSLIGSMAVIIGLYIVLWGKAEEVVVLNVKTGSESMLNPTEEVKISIACSKANLEEPLLSAHSPSHN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6263g00008 369 PANTHER WAT1-RELATED PROTEIN 8 326 IPR030184 GO:0016020|GO:0022857
Vium6263g00008 369 Pfam EamA-like transporter family 11 144 IPR000620 GO:0016020
Vium6263g00008 369 Pfam EamA-like transporter family 181 319 IPR000620 GO:0016020
Vium6263g00008 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 145 - -
Vium6263g00008 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6263g00008 Vium-Chr6263 57698 60054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6263g00008 1 369 Nodulin-like Gene Family AT4G30420 50.263 1.88e-127 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6263g00008 - - gmx:100812331 560.836