Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6263g00007 ATGGGATGGTTAAGGTCGTATCTGCCAGTGATGGGTATGGTGTTGAATCAGTTCATTTATGCAGGAGTTAGTCTCAGCACAAGACTTGTTTTCTCAGCAGGAATGAGTCCAAGGGTGTTTATGGTTTATCGCCATGTTTTTGCAACCATTGTAATTGCTCCAATAGCTTATTTCTCACGCAGAAATTCTCGCTTCTATTGCTTAAACTTGAAGAGTTTCTCATGGATATTCCTCGTCTCCTTCATAGGCATTGTCTTGACTCAAAATTTGTTTGGCGAAGCTTTATACCTGACAAATTCTTCGGTGGCAAGTGCATTTGTGAATCTTGTTCCAGCAGTAACATTTGTGATAGCAGCTTGTGCAGGAATGGAGAAAGTGAACATTCGAAGCTGGAGATCTATAGCGAAGATAGTAGGAACAGTGATATGTGTGAGTGGAGCAGTGTCCATAGCTTTGTTAAAGGGTCCAAAGCTTCTAAATGCAGAAAACCTGCCATCAAAATCCATCACCATGGCTTCATCACAAGCTGATTCTTGGTTCCTGGGTTGTCTGTTTCTCACTGTATCCTGCTTTTCTTGGTCAATCTGGCTCATTTTGATGGTTCCTGCCTCTAAAAGCCACCCAGATCCCTTGTCCTTTTCAGCATGGATGTGTTTTATGGCAATAGTGCAATCAACGATAGTGGCATTAGTGTTGGAACAAGATCCACTTGCATGGAAGATTAATTCTCTACTTGAATTTGGTTCTGCTATATATGCAGGAGTTATGGGATCTGCAGTAACATTCTTTATCCAAGCATGGTGCATCTCACTCACAGGTCCTCTTTTCAGTGCAATGTTCAATCCTCTTACGGTAGTGATTGTCACCATATTGGCTCCTTTATTACTACATGAGGAAGTATACTTTGGAAGCTTGATTGGGTCAATAGCAGTGATAATTGGGTTATATATTGTGCTATGGGGTAAAGCTGAAGAAGTTGTGGTGCTGAATGTTAAGACAGATTCAGAATCAATGCTTAATCCCACAGAGGAAGTCAAAATATCCATAAACAAGGAATCTTCTTCAGTTTGTAAAACCAATATGGAAGAACCCCTTCTATCTCCTCATTCTCCTTCACATAATTAA 1125 0.4053 MGWLRSYLPVMGMVLNQFIYAGVSLSTRLVFSAGMSPRVFMVYRHVFATIVIAPIAYFSRRNSRFYCLNLKSFSWIFLVSFIGIVLTQNLFGEALYLTNSSVASAFVNLVPAVTFVIAACAGMEKVNIRSWRSIAKIVGTVICVSGAVSIALLKGPKLLNAENLPSKSITMASSQADSWFLGCLFLTVSCFSWSIWLILMVPASKSHPDPLSFSAWMCFMAIVQSTIVALVLEQDPLAWKINSLLEFGSAIYAGVMGSAVTFFIQAWCISLTGPLFSAMFNPLTVVIVTILAPLLLHEEVYFGSLIGSIAVIIGLYIVLWGKAEEVVVLNVKTDSESMLNPTEEVKISINKESSSVCKTNMEEPLLSPHSPSHN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6263g00007 374 Pfam EamA-like transporter family 181 319 IPR000620 GO:0016020
Vium6263g00007 374 Pfam EamA-like transporter family 11 144 IPR000620 GO:0016020
Vium6263g00007 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 145 - -
Vium6263g00007 374 PANTHER WAT1-RELATED PROTEIN 8 334 IPR030184 GO:0016020|GO:0022857
Vium6263g00007 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6263g00007 Vium-Chr6263 43986 49334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6263g00007 1 374 Nodulin-like Gene Family AT4G30420 50.396 2.75e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6263g00007 - - gmx:100812331 541.962