Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium625g00001 ATGGAGTTTCCTTCTCAAACATCCGGTCACCAGGTCAAGGAAGAGAACAGAACTGAATCAAGTCCTCGAGATGAACAACACCGTCGTCAACAAGAGATTGTTATGCAGGAGCCACCACTGGCTACTCCTGAAAGATCCACCGTCGAGGTTGGGCCAAATGTTTCTTGCCTATCCAAAATGGAAGAGGCTGATGAACTTGAAAATGCGAAAGCCGAAATGGGTGAAGTGATAGAAGAAAATCAAAGATTAAAGATGCGTTTGAACAGAATACTAAATGATTACCGAACACTGCAAATGCAATTCCACAGTATAGTTGAACAAGAGACAAAAGATTGTTCTGAGAAACCGAACAACGATGGCGAAGATGAAGGAGCGATGGAGGAATCAGAACTAGTTTCCCTGAGTCTTGGAAGAATTCCAATTATAAGAAGCAACGAGAAAGGGAAAGTCCCTAAAACATTGAAAGAAGAAGATAAAGAAGGGTTGTCCCTTGGATTGGAGTGCAAGTTCGAAACATCAAAATCTGGAAGTGCAAGTGAACATGTGGGGAATCCAAGCCCTAGCAATAGTGTTGAAGAAGTGGTAAAAGAAGAAGGTGGTGGAGAAAGCAAGGGACAGAAGACAAATAGAGATGAGATTGCTGAGCAAAACCCTGCGAAGAAAGCAAGAGTTTGTGTGAGAGCAAGATGTGACACCCCAACTTTGAACGATGGATGTCAATGGAGGAAATATGGCCAGAAGATTTCAAAGGGAAATCCTTGTCCTCGAGCTTATTATCGTTGCACAGTTGCACCATCATGCCCAGTGAGAAAGCAGGTACAAAGATGTGCTCAAGACATGTCGATATTAATCACCACCTACGAAGGAATCCACAACCACCCTCTTCCTCTTTCAGCAACAGCCATGGCTTCCACCACTTCCGCAGCAGCTTCCATGCTATTGTCTGGATCATCAACCTCACTCTCTGGATCAAGAATTTCCCCAAACATCACCACCACTGCTGCAGATCTTCATGGAATAAACTTTTCCCTCCCAGATTCTTCCCAACCAAATCAATACTACCTTTCCCATCCTTCACTCTCATCTTCACCTTCACACCCCACCATCACTCTCGACCTCACTTCCAATCCATCCTCCTCTTCTCCTCCTTTTGTCAAATTCACTTCAAATTCAAACTACAACAACCCTCACAGGTACCCTCCTTCCACAAGCCTCAGCTTCACTTCCTCCCAATCTAACACAACTTCTTGGACCAACGGCTTTTTCAGCTATAACACTCAACCATATAATAACAACAGGAATACCAATGCCAATGCCAATGTCAATGTCCTTGGCAACATAAATCTTGGTAAACAACAACCCATGGAGAACATCTACAGTTCCTTCATGCAAAGGAACAACAATCCAATCTCTCCTCTGCCGGACACCATAGCTGCAGCAACGAAAGTAATCACAGCAGACCCTAATTTTCAGTCAGCTTTGGCAGCGGCACTTTCTTCGGTTATTGGTTCAGGAAGCATTCAGGGAAACCAAGGTACATTAGAAAATCTGATTCAGAAAATAAAATGGGGTGAAATGCTTCCAACATCTTTTGCCTTACCTTCATCTCCAAAAGTCAATGGGTGTGCTTCAAGCTTCTTGAACAAATCACCAGCTAATTCACAACCAGGAAGTTTGATGTTTCTTCAACCACCTTTGCCACTTTCTAGCCCCAAAAGCGCTTCTGGGTCCCCCGGAGATCACAGAGACAAGAAAAATTAG 1761 0.4378 MEFPSQTSGHQVKEENRTESSPRDEQHRRQQEIVMQEPPLATPERSTVEVGPNVSCLSKMEEADELENAKAEMGEVIEENQRLKMRLNRILNDYRTLQMQFHSIVEQETKDCSEKPNNDGEDEGAMEESELVSLSLGRIPIIRSNEKGKVPKTLKEEDKEGLSLGLECKFETSKSGSASEHVGNPSPSNSVEEVVKEEGGGESKGQKTNRDEIAEQNPAKKARVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMSILITTYEGIHNHPLPLSATAMASTTSAAASMLLSGSSTSLSGSRISPNITTTAADLHGINFSLPDSSQPNQYYLSHPSLSSSPSHPTITLDLTSNPSSSSPPFVKFTSNSNYNNPHRYPPSTSLSFTSSQSNTTSWTNGFFSYNTQPYNNNRNTNANANVNVLGNINLGKQQPMENIYSSFMQRNNNPISPLPDTIAAATKVITADPNFQSALAAALSSVIGSGSIQGNQGTLENLIQKIKWGEMLPTSFALPSSPKVNGCASSFLNKSPANSQPGSLMFLQPPLPLSSPKSASGSPGDHRDKKN 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium625g00001 586 Coils Coil 59 100 - -
Vium625g00001 586 Pfam WRKY DNA -binding domain 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium625g00001 586 MobiDBLite consensus disorder prediction 195 217 - -
Vium625g00001 586 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 58 511 IPR044810 GO:0003700
Vium625g00001 586 MobiDBLite consensus disorder prediction 107 122 - -
Vium625g00001 586 MobiDBLite consensus disorder prediction 554 586 - -
Vium625g00001 586 MobiDBLite consensus disorder prediction 174 191 - -
Vium625g00001 586 MobiDBLite consensus disorder prediction 12 32 - -
Vium625g00001 586 MobiDBLite consensus disorder prediction 107 131 - -
Vium625g00001 586 MobiDBLite consensus disorder prediction 365 389 - -
Vium625g00001 586 ProSiteProfiles WRKY domain profile. 230 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium625g00001 586 MobiDBLite consensus disorder prediction 1 53 - -
Vium625g00001 586 SUPERFAMILY WRKY DNA-binding domain 228 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium625g00001 586 MobiDBLite consensus disorder prediction 174 217 - -
Vium625g00001 586 SMART WRKY_cls 235 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium625g00001 586 FunFam probable WRKY transcription factor 31 220 297 - -
Vium625g00001 586 Gene3D WRKY domain 220 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium625g00001 Vium-Chr625 2719 6894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium625g00001 73 520 WRKY Transcription Factor Family AT5G15130 40.491 1.28e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium625g00001 WRKY 2.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium625g00001 - - vun:114162352 820.461