Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6255g00013 ATGGCATCATCCAGCTCCTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCGCCTTACTTCCCACCCGAAGAGCCTCAGAAATTCGCCAACGTCCACAAAATTTTTGGTGCTAGCAATGTGACGAAACTCCTGAACGAACTTCTCCCTCAGCAGAGGGAGGATGCAGTGAACTCACTCGCATATGAAGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTACTCTTACACTGACATCCCTCCAGCATCTCTTTCTGTGCCACCAGGACTTGCTGCATTTCAACATGTGCCCCAAAGGCAGTTTACTGCAAGATTTGGTAACGAAGGAACTGGGTTCTATCGGCAAGCTACTGCTACTGCTTATTCCTTTCCTTATGCCCTTCCTTGGACTGATACCTCTTCGGAGGACATCAGTGAGGGAGGAGGTGGAGGAGGTAATTTGTGA 561 0.4991 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDIPPASLSVPPGLAAFQHVPQRQFTARFGNEGTGFYRQATATAYSFPYALPWTDTSSEDISEGGGGGGNL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6255g00013 186 Coils Coil 89 109 - -
Vium6255g00013 186 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vium6255g00013 186 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Vium6255g00013 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6255g00013 Vium-Chr6255 140797 143371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6255g00013 2 186 AS2 family AT5G63090 61.257 1.37e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium6255g00013 LOB 3.1e-42 No_clan